SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3558

Length: 3009 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3558
ATGGGATCCTCGCAGATGAAACCCGATAGCCACCAGTCTTTTTAAAGTGCTACATCAGTCGGATCCGGGCACCTAATGTACTCTCTACAGGCCATAATTACGGATCAGGAATTACTACTGGATCTTCATTGCTGAGAACTGATTTCCAAATGACAAAAAGTATTTGACTGGATCACATTTAGCTCCCTGTAACCTGTTATGCTATTATTATCCTCATGAAATTATTTCAAAATGCCTGCAAAGTCACTGGATGCTTGTGTAACAAACTAATCTGGTGATGGAGAAAATGAGACCAAAGATAAAGCTCAAAGGTGCAGCTAATAATAAGGCAGCAGACAGTGTTGAGTCAGAAAGAAGTCAAGACCAATTGAAGGGTGTGCGAGTAAATCCTGATGCAAATGCAGGTCAAGGAGAAGGTTTCTTCCCCGTACTCACTGGAGGGATCAAACGGAAGAGGGGGCCCAGGGCTGGAGAAAGGAGAGCAAAAGAGAAGCAACGGTTTACTTTTAGCAGGGGCTCAGCAGTGCCATCTGTTGTAGGAGATGAAGAATTTTCAGATCAAGATGAAAATGAGAGCAAAGAAGACATCGAAGTCAATGTTAAGATGATCGATCAAAGGCAGGTCGCAACAGCTAGTAATGGCTTGATTACTGAATCAGTGGAAATAAAGGGTGCACAATCATTTCAACAAAAACAAGGACATTTGAAGGTCAGGGTTAAGGCATCGAAACTTCATGAAGAATCTAATACTCCTGAAAGGCAAAAGGTCAATGATAATGAAAATGCTAATTCATCAGAAGCTCCGAAGGAATGCCAGAAGCCAGATTTGAAACAACTTGAGAAGCTAAGCAATTTAATGTTGAAGGCTGCAAGACCCCTTGATCAGCCAAGCGCTCCAAGGCAAAGCAGGTCTAGCAAATCTAATGAAATGGCCAGCAGTCCAAATCAAAATGAGACAGAGAAGTTGCAGATTAGCTCCGAAATTCGGGAAAAGAACATGGTAGAAGTATCATCAGGACCGCATCAGAGGCATAGAAGGCAATCTCATGCAGTTGAAAAGGGTCAAAATGACCAGTCTGAATATGATGCAAAAGAATTGAAGGATGCTTTGATGGTTGTAAAGAAAATAATGAAAATGGATGCAGCAGAACCCTTCAATACTCCAGTAAATCCAGTTGCTCTTGGTATCCCAGATTATTTTGATGTCATTGACACCCCAATGGACCTGGGCACAGTATGCAGTGCACTGGAAAGAGGTGAAAAGTACATGAATTCCCGGGATGTTTTTAAGGATGTTCAATTTATCTGGGAGAATTGCTATAAATATAATAGTAAAGGTGATCCCATTTTGGATCTTATGAAAAGGGTGAAGAAGAATTTTTTAAAGTATTGGACTGCAGCTGGTTTATATTATGAGTCACCTAAGAGGACAACTGGGACAGAGCATGAAGGTGTTGATAACCCAGCTGGAAATGAAGATCCACAAACAGGGAAAACAAAATTGATAGAAACTGCACAGTCTTGTTTGAGAAGTCCAAAATCAAGGGATGAACAAGTTGAACAGGTTATTCCAGCGAGTGAGGCAAGGGAACAAGTCCAAGAGAAAAATGTTGAATCAACTCAGGTTCAACAATGTGCCAAAGAATCGGATACTGAGATAGATATTTTGCAACCTCCTCAAACAGACCCTGTGGTCAAAAGCAAGGGGATGAAACTTAGGATTAAGAAATCAAAGTCTGAACATGAACAAGAGAAGACCGTGTCAATTACTGAAAAGACAGATGGCATTGGAACTGATGAAGAGTCTGGACCTAAAGTTGGTGATTCTGCTCAATCCTTCGAGGAAGATGCTCAACAGAAGGATCTAACTGTAAAATCCAAGACACGACGTCGACATGGCAAATATCACCATAAAGATGGCTGCCTATGTGCAGTCTGCAATGCAAAACGACGTAGGCATGAACGTGAAGAAAATGCCCAGCTAGCTAAGAACCAAAGTACAATGGTTGATGGTGATATATCAGAGAAAATGAAGGACAAGGTAAGTGTGTTTGTGGAGGAGCCTGTTTGTGAAGAGGGTAGAACGAAACCAGTGTATGCATCAAATACAGGTTTAATTGTCGAGACAGAAGAGCAAGAGCGTAAAGTCAAGGTAGAAACAAGAAAACAGAAAGTGAAGGCAGAACTCCAAGATGAACAGGAGGTGCATATGCATGAAGAAAGAGAAACACGTGATAAAGAAAGCAGAAAGGCACCACTACATGTAGAACATGGATTACAAATGCAGTGGGAAAAGAGGAACAGAAAAAGGAACCAGAAATGCAACAGGAGGAGGATGAGAAGGAATCACTAATGCAAGATGCAGATGAGGAACAGCAGCAGGAGGGAAAAGACTTGCAAAATCAAGACGAGGTTCAACAGGAAGAAGCAAGAGGGAAAATGCAAGAGGAAGCAGGGACGCCACTGCAAGAAGGAGATATACAACAAGAGGGTGAGTTTGGGAGGTATTATCCTGCGGATTATGAGATCCCAGTGCAATATGCAAGTCCTTCAATAATGCAAATTTGCAAGGTCCTGTTTACTCGTAACCATTATTCTGTGTGGAATCGGGCACATTCATTGACTTATGAACCTTCACTAACAATCTCAGAGAATAATATCCTGGCTGCTATTTCAACGTTTATGGAGTAGAATCACTATTTTTCTAGGTGTTTGTATTATGGTCAGGATAGTTGTTGTATTGAGAACTCCTTTATGCTAAAATTTAAGCATTGGAATTGATTAGACTTATTTCCTCCTTTGTAAAGTGAGAAAAACTTGTTAATGTCAAATATGTTTGTTTAGTGTGTGGATAAATATTCATCACTCCTTTAGTGTATTGGTTATTGCTATATAACTACAACTAGCACACCCCCATTATGGGAGATTGGTGACGTGGAAAACCATTTTATCATGAAAGGAATAATGATGTATTGTATTTTTAAAGAATGTTGGTAATGTTATGAATGA

Ace file of the UniGene sp_v2.0_unigene3558 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bromodomain n=1 Tax=Medicago truncatula RepID=Q1SKV9_MEDTR	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	dna-binding bromodomain-containing protein	-	-	50%

Source	InterPros	Term	Type	Identity
Sma3	Bromodomain	IPR001487	-	-
Sma3	Transposase, Ptta/En/Spm, plant	IPR004252	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: your sequence is longer than subject: 692 - 377

Fln protein: MEKMRPKIKLKGAANNKAADSVESERSQDQLKGVRVNPDANAGQGEGFFPVLTGGIKRKRGPRAGERRAKEKQRFTFSRGSAVPSVVGDEEFSDQDENESKEDIEVNVKMIDQRQVATASNGLITESVEIKGAQSFQQKQGHLKVRVKASKLHEESNTPERQKVNDNENANSSEAPKECQKPDLKQLEKLSNLMLKAARPLDQPSAPRQSRSSKSNEMASSPNQNETEKLQISSEIREKNMVEVSSGPHQRHRRQSHAVEKGQNDQSEYDAKELKDALMVVKKIMKMDAAEPFNTPVNPVALGIPDYFDVIDTPMDLGTVCSALERGEKYMNSRDVFKDVQFIWENCYKYNSKGDPILDLMKRVKKNFLKYWTAAGLYYESPKRTTGTEHEGVDNPAGNEDPQTGKTKLIETAQSCLRSPKSRDEQVEQVIPASEAREQVQEKNVESTQVQQCAKESDTEIDILQPPQTDPVVKSKGMKLRIKKSKSEHEQEKTVSITEKTDGIGTDEESGPKVGDSAQSFEEDAQQKDLTVKSKTRRRHGKYHHKDGCLCAVCNAKRRRHEREENAQLAKNQSTMVDGDISEKMKDKVSVFVEEPVCEEGRTKPVYASNTGLIVETEEQERKVKVETRKQKVKAELQDEQEVHMHEERETRDKESRKAPLHVEHGLQMQWEKRNRKRNQKCNRRRMRRNH*

Protein Length: 693

Fln nts: ATGGGATCCTCGCAGATGAAACCCGATAGCCACCAGTCTTTTTAAAGTGCTACATCAGTCGGATCCGGGCACCTAATGTACTCTCTACAGGCCATAATTACGGATCAGGAATTACTACTGGATCTTCATTGCTGAGAACTGATTTCCAAATGACAAAAAGTATTTGACTGGATCACATTTAGCTCCCTGTAACCTGTTATGCTATTATTATCCTCATGAAATTATTTCAAAATGCCTGCAAAGTCACTGGATGCTTGTGTAACAAACTAATCTGGTG_-_ATGGAGAAAATGAGACCAAAGATAAAGCTCAAAGGTGCAGCTAATAATAAGGCAGCAGACAGTGTTGAGTCAGAAAGAAGTCAAGACCAATTGAAGGGTGTGCGAGTAAATCCTGATGCAAATGCAGGTCAAGGAGAAGGTTTCTTCCCCGTACTCACTGGAGGGATCAAACGGAAGAGGGGGCCCAGGGCTGGAGAAAGGAGAGCAAAAGAGAAGCAACGGTTTACTTTTAGCAGGGGCTCAGCAGTGCCATCTGTTGTAGGAGATGAAGAATTTTCAGATCAAGATGAAAATGAGAGCAAAGAAGACATCGAAGTCAATGTTAAGATGATCGATCAAAGGCAGGTCGCAACAGCTAGTAATGGCTTGATTACTGAATCAGTGGAAATAAAGGGTGCACAATCATTTCAACAAAAACAAGGACATTTGAAGGTCAGGGTTAAGGCATCGAAACTTCATGAAGAATCTAATACTCCTGAAAGGCAAAAGGTCAATGATAATGAAAATGCTAATTCATCAGAAGCTCCGAAGGAATGCCAGAAGCCAGATTTGAAACAACTTGAGAAGCTAAGCAATTTAATGTTGAAGGCTGCAAGACCCCTTGATCAGCCAAGCGCTCCAAGGCAAAGCAGGTCTAGCAAATCTAATGAAATGGCCAGCAGTCCAAATCAAAATGAGACAGAGAAGTTGCAGATTAGCTCCGAAATTCGGGAAAAGAACATGGTAGAAGTATCATCAGGACCGCATCAGAGGCATAGAAGGCAATCTCATGCAGTTGAAAAGGGTCAAAATGACCAGTCTGAATATGATGCAAAAGAATTGAAGGATGCTTTGATGGTTGTAAAGAAAATAATGAAAATGGATGCAGCAGAACCCTTCAATACTCCAGTAAATCCAGTTGCTCTTGGTATCCCAGATTATTTTGATGTCATTGACACCCCAATGGACCTGGGCACAGTATGCAGTGCACTGGAAAGAGGTGAAAAGTACATGAATTCCCGGGATGTTTTTAAGGATGTTCAATTTATCTGGGAGAATTGCTATAAATATAATAGTAAAGGTGATCCCATTTTGGATCTTATGAAAAGGGTGAAGAAGAATTTTTTAAAGTATTGGACTGCAGCTGGTTTATATTATGAGTCACCTAAGAGGACAACTGGGACAGAGCATGAAGGTGTTGATAACCCAGCTGGAAATGAAGATCCACAAACAGGGAAAACAAAATTGATAGAAACTGCACAGTCTTGTTTGAGAAGTCCAAAATCAAGGGATGAACAAGTTGAACAGGTTATTCCAGCGAGTGAGGCAAGGGAACAAGTCCAAGAGAAAAATGTTGAATCAACTCAGGTTCAACAATGTGCCAAAGAATCGGATACTGAGATAGATATTTTGCAACCTCCTCAAACAGACCCTGTGGTCAAAAGCAAGGGGATGAAACTTAGGATTAAGAAATCAAAGTCTGAACATGAACAAGAGAAGACCGTGTCAATTACTGAAAAGACAGATGGCATTGGAACTGATGAAGAGTCTGGACCTAAAGTTGGTGATTCTGCTCAATCCTTCGAGGAAGATGCTCAACAGAAGGATCTAACTGTAAAATCCAAGACACGACGTCGACATGGCAAATATCACCATAAAGATGGCTGCCTATGTGCAGTCTGCAATGCAAAACGACGTAGGCATGAACGTGAAGAAAATGCCCAGCTAGCTAAGAACCAAAGTACAATGGTTGATGGTGATATATCAGAGAAAATGAAGGACAAGGTAAGTGTGTTTGTGGAGGAGCCTGTTTGTGAAGAGGGTAGAACGAAACCAGTGTATGCATCAAATACAGGTTTAATTGTCGAGACAGAAGAGCAAGAGCGTAAAGTCAAGGTAGAAACAAGAAAACAGAAAGTGAAGGCAGAACTCCAAGATGAACAGGAGGTGCATATGCATGAAGAAAGAGAAACACGTGATAAAGAAAGCAGAAAGGCACCACTACATGTAGAACATGGATTACAAATGCAGTGGGAAAAGAGGAACAGAAAAAGGAACCAGAAATGCAACAGGAGGAGGATGAGAAGGAATCACTAA___TGCAAGATGCAGATGAGGAACAGCAGCAGGAGGGAAAAGACTTGCAAAATCAAGACGAGGTTCAACAGGAAGAAGCAAGAGGGAAAATGCAAGAGGAAGCAGGGACGCCACTGCAAGAAGGAGATATACAACAAGAGGGTGAGTTTGGGAGGTATTATCCTGCGGATTATGAGATCCCAGTGCAATATGCAAGTCCTTCAATAATGCAAATTTGCAAGGTCCTGTTTACTCGTAACCATTATTCTGTGTGGAATCGGGCACATTCATTGACTTATGAACCTTCACTAACAATCTCAGAGAATAATATCCTGGCTGCTATTTCAACGTTTATGGAGTAGAATCACTATTTTTCTAGGTGTTTGTATTATGGTCAGGATAGTTGTTGTATTGAGAACTCCTTTATGCTAAAATTTAAGCATTGGAATTGATTAGACTTATTTCCTCCTTTGTAAAGTGAGAAAAACTTGTTAATGTCAAATATGTTTGTTTAGTGTGTGGATAAATATTCATCACTCCTTTAGTGTATTGGTTATTGCTATATAACTACAACTAGCACACCCCCATTATGGGAGATTGGTGACGTGGAAAACCATTTTATCATGAAAGGAATAATGATGTATTGTATTTTTAAAGAATGTTGGTAATGTTATGAATGA

Fln Alignment:

Contig3558___LDQPSAPRQSRSSKSNEMASSPNQNETEKLQISSE---IREKNMVEVSSGPHQRHRRQSHAVEKGQNDQSEYDAKELKDALMVVKKIMKMDAAEPFNTPVNPVALGIPDYFDVIDTPMDLGTVCSALERGEK--YMNSRDVFKDVQFIWENCYKYNSKGDPILDLMKRVKKNFLKYW
D5ABJ0______________VDYMTSKVEQLEQKVNEVARFHISSSKDKIQHSKSGLVLRDREREKINLN----HRKQQEASRR-EAGCSKRMAELMRQFSTILRQITQHRWAWPFMTPVDVKGLGLHDYHDVIKKPMDFGTIRRKMDAKDATGYKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKW

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1999		87		12	0.992554
2000	12		87		0.992554
2054	87	12			0.992554
2055	85	14			0.993533
2057	14			85	0.993533
2175	60		40		1.0
2177	16	83			0.994512
2178	16			83	0.994512
2180		83	16		0.994512
2525	11		88		0.923564
2620	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain