SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3552

Length: 2064 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3552
ATGGGGGAGAGTTGAGTAACCAGAGGTCCTTCGGTCCTGCTCCATGTATGTAAGCGCACATATTTCCGTGCAAGCGAGCAGCCAATATCGCTGATACCTGAGCGGCTGAGATTAAGAGGGGAGCATTATGGGTTCCTATATTCTTCTCAGGGACCAAGATGTTAATTCCGCGGATTCCACATGCTGTATGGTCGAAGAAAATCGATCTGACATTGAATCAGAGCTTGCTAAACGCCTTTCAAACTCGAAGCTCGATGGCGCTGGAAATGGAGCCAATGCAGCAGACGCTAAGCAGAGGCTTAAATCTCTTGACATTTTCCGGGGGTTAACCGTCGCGCTTATGTATATTATTTGATGATGCTGGAGGAGTTCTTCCTATTATAAATCACTCTCCGTGGAATGGTGTAACAATTGCAGATTTTGTAATGCCGTTTTTCTCTTCATTGTTGGTGTTGCCCTTGCACTGGTGTACAAGAATGTATCTGATAAAGTTGCTGCAACTCAGAAGGCCATTTTAAGGACTATCAAGATTTTTATTTTGGGTATCATACTACAAGGTGGTTACTTTCATGGACTTGATGATTTGAGTTATGGAGTTGACTTACTACATATACGATGGCTTGGTATACTACAGAGAATTGCGATTGGATATTTCCTGGCAGCAATGTGTGAAATTTGGTTAACATCCAACAGTCTGGTAGATTCTTTTATGGGGTTTGCGAAGAAATACTGCATTCAATGGGTCGTTGCAGTTCTACTATCAACACTTTACGTGGGATGTTTATATGGTCTATATGTGCCTGATTGGCAGTTTGAAGTACCTGCAATAAATTTTCATGGAACCTCATTAAATAATGGATCTACAGTGCAGACCGTAAAATGTGGATTGAGGGGAAGCCTTGGACCACCTTGTAATGCTGTTCGTATGATTGATTATTCTGTTCTAGGTGTAAACCATTTATATCAACATCCTGTGTATAAGCGAACAAAGGAATGCAGTGTTAACTCACCAGATTATGGCCCACTTCCATCAAATGCACCTGCCTGGTGTCAAGCTCCTTTTGACCCAGAAGGGCTGCTAAGTTCAATTATGGCTTCTGTGACCTGTTTTATCGGACTACATTTTGGGCACATTCTTGTGAATTTCAAGGAACACAGAGAGAGGATTTTAAATTGGATAATCTCCTCTTTAGTACTTATGTTATTTGGAATATTACTGAATGTATTGGGAATGCCTTTAAACAAGGCTCTCTATACATTCAGCTACATGTGTATCACATCGGGTGCAGCTGGCCTTCTCTTCTCAGCAATCTATTTCTTTGTTGATATGGCTGGGTATTGGCGGCCAACGGTATTACTAGAATGGATGGGATTGAATGCCCTTCTTATATATGCTCTTGCAGCATGTGACTTGTTTTCGGCAGCTATGCAAGGATTTTATTGGAAATCACCTCAGAATAATGTTGTGACTGTTATAGAGGCATTGTTTGAAGCAGTTGTCCATTCTAAAAGATGGGGTAAGCTAGCATATGTATTGTTTGAGATATTCTTCTGGTCCCTCGTTGCAGGTTTACTGCACATGAAAGGAATCTATATGAAGTTATAACATATAATAACTCACCAATTAGAGTGTATATGTGACTCAATATTGTAAAAATGACAATGTCAGAATTGTTATGAGTCTTTTTAGGATATTGGAGTGTAGACAACTCCATTCAAAATGAATTAGGAGTTGAAAAAGTGGTAACTTGCTCTTTTTAAATTGTATACAATTGGGTAAGTGTAGTTTAGTCTAGTCCCATCCCATATGGACCTTAATAGAGTTCTTCATGAGTGTATTATCTTTAAGAAACTTATCATGCTACTTTCTGTAGGCATCATTTAAGTGTGAAGTTTATGTGGCTTAACATGCATTACTTGCCTTTATTATGTTGGGTACCTACAAAATGATTTTTGCAGTTCAGTCAATGCAAAATATCAGGAAGCGAGTAGAATGATGGATTGTAGCTTGTGACTGGAAGATGATTATTTATGTCTAGCTATGTAAATCTGAAATTTCAAAGC

Ace file of the UniGene sp_v2.0_unigene3552 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	heparan-alpha-glucosaminide n-acetyltransferase-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC18

Fln msg: your sequence is longer than subject: 314 - 218

Fln protein: MCEIWLTSNSLVDSFMGFAKKYCIQWVVAVLLSTLYVGCLYGLYVPDWQFEVPAINFHGTSLNNGSTVQTVKCGLRGSLGPPCNAVRMIDYSVLGVNHLYQHPVYKRTKECSVNSPDYGPLPSNAPAWCQAPFDPEGLLSSIMASVTCFIGLHFGHILVNFKEHRERILNWIISSLVLMLFGILLNVLGMPLNKALYTFSYMCITSGAAGLLFSAIYFFVDMAGYWRPTVLLEWMGLNALLIYALAACDLFSAAMQGFYWKSPQNNVVTVIEALFEAVVHSKRWGKLAYVLFEIFFWSLVAGLLHMKGIYMKL*

Protein Length: 315

Fln nts: ATGGGGGAGAGTTGAGTAACCAGAGGTCCTTCGGTCCTGCTCCATGTATGTAAGCGCACATATTTCCGTGCAAGCGAGCAGCCAATATCGCTGATACCTGAGCGGCTGAGATTAAGAGGGGAGCATTATGGGTTCCTATATTCTTCTCAGGGACCAAGATGTTAATTCCGCGGATTCCACATGCTGTATGGTCGAAGAAAATCGATCTGACATTGAATCAGAGCTTGCTAAACGCCTTTCAAACTCGAAGCTCGATGGCGCTGGAAATGGAGCCAATGCAGCAGACGCTAAGCAGAGGCTTAAATCTCTTGACATTTTCCGGGGGTTAACCGTCGCGCTTATGTATATTATTTGATGATGCTGGAGGAGTTCTTCCTATTATAAATCACTCTCCGTGGAATGGTGTAACAATTGCAGATTTTGTAATGCCGTTTTTCTCTTCATTGTTGGTGTTGCCCTTGCACTGGTGTACAAGAATGTATCTGATAAAGTTGCTGCAACTCAGAAGGCCATTTTAAGGACTATCAAGATTTTTATTTTGGGTATCATACTACAAGGTGGTTACTTTCATGGACTTGATGATTTGAGTTATGGAGTTGACTTACTACATATACGATGGCTTGGTATACTACAGAGAATTGCGATTGGATATTTCCTGGCAGCA_-_ATGTGTGAAATTTGGTTAACATCCAACAGTCTGGTAGATTCTTTTATGGGGTTTGCGAAGAAATACTGCATTCAATGGGTCGTTGCAGTTCTACTATCAACACTTTACGTGGGATGTTTATATGGTCTATATGTGCCTGATTGGCAGTTTGAAGTACCTGCAATAAATTTTCATGGAACCTCATTAAATAATGGATCTACAGTGCAGACCGTAAAATGTGGATTGAGGGGAAGCCTTGGACCACCTTGTAATGCTGTTCGTATGATTGATTATTCTGTTCTAGGTGTAAACCATTTATATCAACATCCTGTGTATAAGCGAACAAAGGAATGCAGTGTTAACTCACCAGATTATGGCCCACTTCCATCAAATGCACCTGCCTGGTGTCAAGCTCCTTTTGACCCAGAAGGGCTGCTAAGTTCAATTATGGCTTCTGTGACCTGTTTTATCGGACTACATTTTGGGCACATTCTTGTGAATTTCAAGGAACACAGAGAGAGGATTTTAAATTGGATAATCTCCTCTTTAGTACTTATGTTATTTGGAATATTACTGAATGTATTGGGAATGCCTTTAAACAAGGCTCTCTATACATTCAGCTACATGTGTATCACATCGGGTGCAGCTGGCCTTCTCTTCTCAGCAATCTATTTCTTTGTTGATATGGCTGGGTATTGGCGGCCAACGGTATTACTAGAATGGATGGGATTGAATGCCCTTCTTATATATGCTCTTGCAGCATGTGACTTGTTTTCGGCAGCTATGCAAGGATTTTATTGGAAATCACCTCAGAATAATGTTGTGACTGTTATAGAGGCATTGTTTGAAGCAGTTGTCCATTCTAAAAGATGGGGTAAGCTAGCATATGTATTGTTTGAGATATTCTTCTGGTCCCTCGTTGCAGGTTTACTGCACATGAAAGGAATCTATATGAAGTTATAA___CATATAATAACTCACCAATTAGAGTGTATATGTGACTCAATATTGTAAAAATGACAATGTCAGAATTGTTATGAGTCTTTTTAGGATATTGGAGTGTAGACAACTCCATTCAAAATGAATTAGGAGTTGAAAAAGTGGTAACTTGCTCTTTTTAAATTGTATACAATTGGGTAAGTGTAGTTTAGTCTAGTCCCATCCCATATGGACCTTAATAGAGTTCTTCATGAGTGTATTATCTTTAAGAAACTTATCATGCTACTTTCTGTAGGCATCATTTAAGTGTGAAGTTTATGTGGCTTAACATGCATTACTTGCCTTTATTATGTTGGGTACCTACAAAATGATTTTTGCAGTTCAGTCAATGCAAAATATCAGGAAGCGAGTAGAATGATGGATTGTAGCTTGTGACTGGAAGATGATTATTTATGTCTAGCTATGTAAATCTGAAATTTCAAAGC

Fln Alignment:

Contig3552___FDPEGLLSSIMASVTCFIGLHFGHILVNFKEHRERILNWIISSLVLMLFGILLNVLGMPLNKALYTFSYMCITSGAAGLLFSAIYFFVDMAGYWRPTVLLEWMGLNALLIYALAACDLFSAAMQGFYWKSPQNNVVTVI
D5AC18______________FDPEGLLSSIMAVVTCFIGLHFGHILVHFKGHSERVLQCIIPSLGLIFFGIALGIFGMPLNKPLYTFNYMCVTSGAAGLLFVGIYLLVDLYGYRRPTMLLEWMGMNALTLYVLVASDLFFIAIQGFYWRTPANNIVTYI

SNPs (tot: 110)

Position	A %	C %	G %	T %	Probability
755			11	88	0.999952
759	11			88	0.999952
761	87	12			0.999964
762		12	87		0.999964
766	81		12	6	0.999943
767			87	12	0.999964
770		12	81	6	0.999943
772	20	73	6		1.0
774	86		13		0.999973
789		10	90		0.90298
791		20		80	0.999996
793		90	10		0.90298
797	11	11		77	0.968132
800	88	11			0.923564
801	11		88		0.923564
806	88	11			0.923564
807			12	87	0.992554
813	12		87		0.992554
814	85			14	0.993533
816	87			12	0.992554
873		12		87	0.992554
874	87	12			0.992554
875	87	12			0.992554
877			87	12	0.992554
879			85	14	0.993533
883	85			14	0.993533
884			14	85	0.993533
885	14			85	0.993533
887			14	85	0.993533
892			20	80	0.995493
893			20	80	0.995493
895	80	20			0.995493
897	80	20			0.995493
898	80		20		0.995493
899	20			80	0.995493
901		80	20		0.995493
924	10	90			0.90298
926		90		10	0.90298
927	90		10		0.90298
928	90			10	0.90298
946	80			20	0.999996
948	20			80	0.999996
949		80	20		0.999996
950		80		20	0.999996
953		20		80	0.999996
955	80		20		0.999996
956	80	20			0.999996
957	80	20			0.999996
958	20	80			0.999996
969	86	13			0.999973
1155	83		16		0.999991
1176	10	90			0.90298
1207		71	28		1.0
1208	28	71			1.0
1209	71		28		1.0
1211			28	71	1.0
1213		28		71	1.0
1214	28			71	1.0
1215			28	71	1.0
1216	71	28			1.0
1217	71	28			1.0
1218	28			71	1.0
1224		28		71	1.0
1225	28	71			1.0
1229		28		71	1.0
1289		83		16	0.994512
1333			83	16	0.994512
1334		83	16		0.994512
1340		16		83	0.994512
1341	16			83	0.994512
1342			16	83	0.994512
1344		20		80	0.995493
1345	20			80	0.995493
1346	20	80			0.995493
1348		80	20		0.995493
1349	40			20	1.0
1350	80	20			0.995493
1353		80	20		0.995493
1354	20	80			0.995493
1356	80		20		0.995493
1547	10	90			0.90298
1625			75	25	1.0
1626	83		16		0.994512
1629	83			16	0.994512
1632	83	16			0.994512
1634	83		16		0.994512
1637		85	14		0.993533
1639	14		71	14	0.984337
1642		14		85	0.993533
1643			14	85	0.993533
1646	85		14		0.993533
1843		14	85		0.993533
1884		87		12	0.992554
1898	12		87		0.992554
1954	85	14			0.993533
1955	85	14			0.993533
1956		14		85	0.993533
1966			16	83	0.994512
1972	83		16		0.994512
1973	16			83	0.994512
1978		16	83		0.994512
1980	16			83	0.994512
1981	83		16		0.994512
1982			16	83	0.994512
1984		16	83		0.994512
1985	16		83		0.994512
1987			16	83	0.994512
1988	16		83		0.994512
1990			16	83	0.994512
2023		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain