SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3471

Length: 1257 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3471

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative GTP-binding protein [Oryza sativa Japonica Group] gb\|ABF98531.1\| Dynamin-related protein 1C, putative, expressed [Oryza sativa Japonica Group] dbj\|BAH01687.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEC76063.1\| hypothetical prote	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	84%
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	GTPase activity	GO:0003924	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Threonine dehydratase, C-terminal	IPR001721	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Threonine dehydratase I	IPR005787	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS11

Fln msg: your sequence is shorter than subject: 361 - 615

Fln protein: VVTLAVTRQKERDYFKTSPEYKHLAGRMGSEYLAKILSKHLEDVIKARMPTIQSLTNNTIIELEAEMKRLGSPVTTDEGAQLYKILELCRTFDQIFKEHLDGRRPGGERIYAVFDSQLPAALKKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGALIYFKGPAEASVETVHLILKELVRKSINETEDLKRFPRLQAEISAAAIEALERFRDDSRKTVLRLVEMESSYLTVDFFRKLPQELEKGGNPTASTMDRYTDAYLRRIGSNVLSYVGMVCESLKSYIPKAVVHCQVREAKRSLVDHFYTQIGKNGANHLASLLDEDPTLSAHRKSCAKRLELYRNARDEIDASSWAN*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCGGCAGAAGGAACGTGATTATTTTAAAACTAGTCCCGAGTATAAACACTTGGCAGGGCGAATGGGTTCAGAATATCTAGCGAAGATTCTTTCTAAGCATTTAGAGGATGTGATCAAGGCGAGGATGCCAACTATTCAGTCTTTGACAAACAATACAATCATTGAACTTGAAGCAGAGATGAAACGACTTGGCAGTCCTGTTACTACTGATGAAGGCGCTCAATTATATAAGATTTTAGAGCTTTGTCGTACTTTTGATCAGATTTTCAAGGAACATCTTGATGGAAGACGACCTGGGGGTGAGCGAATTTATGCAGTCTTTGACAGCCAGCTACCTGCAGCGCTGAAAAAGTTACCTTTTGATCGGCATCTCTCATTACAGAATGTCAGGAAGGTGGTGTCTGAAGCTGATGGTTATCAACCTCATTTGATAGCTCCTGAACAAGGCTATCGAAGACTTATTGATGGGGCTCTCATTTACTTCAAAGGACCAGCAGAGGCATCTGTTGAAACGGTTCACCTTATATTGAAAGAACTTGTTCGAAAATCAATTAATGAAACAGAGGACTTGAAGCGTTTCCCTCGTCTTCAAGCTGAAATCTCTGCAGCTGCAATAGAAGCTCTGGAGAGATTCCGTGATGACAGCCGAAAAACTGTCCTAAGATTAGTGGAGATGGAGTCTAGTTATTTAACTGTAGATTTCTTTCGAAAACTTCCGCAGGAGCTAGAGAAAGGTGGAAATCCTACAGCATCTACCATGGATCGTTACACAGATGCTTATCTTAGAAGAATCGGTTCAAATGTTCTGTCCTATGTGGGAATGGTATGCGAATCACTAAAAAGTTATATTCCTAAAGCAGTGGTACATTGTCAAGTTCGTGAAGCCAAGCGTTCGTTGGTCGATCACTTCTATACACAAATTGGAAAAAACGGGGCAAACCATCTTGCAAGTCTCTTAGATGAAGATCCTACGCTATCGGCGCACAGAAAATCTTGTGCTAAAAGGCTGGAATTATACAGAAATGCTCGAGATGAAATTGATGCTTCATCTTGGGCCAACTGA___GAACATGGTCCCTCTGCAGATGCATGTGTACATAACTAACATTACTAGTATGTAAAGTCACGGCTCTTAATAGTGAGTAATAGGGTATTTGCAGCTTCTTCCTTTATTTAGGGTGGGTCAGATGGATTCTACAGTGTCGGGCATTTGGATTTGATTTGATTGTCTTTTCCGAG

Fln Alignment:

Contig3471___VTLAVTRQKERDYFKTSPEYKHLAGRMGSEYLAKILSKHLEDVIKARMPTIQSLTNNTIIELEAEMKRLGSPVTTDEGAQLYKILELCRTFDQIFKEHLDGRRPGGERIYAVFDSQLPAALKKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGALIYFKGPAEASVETVHLILKELVRKSINETEDLKRFPRLQXXXXXXXXXXLERFRDDSRKTVLRLVEMESSYLTVDFFRKLPQELEKGGNPTASTMDRYTDAYLRRIGSNVLSYVGMVCESLKSYIPKAVVHCQVREAKRSLVDHFYTQIGKNGANHLASLLDEDPTLSAHRKSCAKRLELYRNARDEIDASSWA
B8LS11______________VDMIAARRKEREYFATSPDYGHLSSRMGSEYLAKLLSKQLESAIKSRIPSILSLINKTIDELESEMNHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGERVYGVFDNQLPAALKKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGALGYFKGPAEASVDAVHFILKELVRKSLNETQELKRFPTLQAEVAAAANEALERFREDGRKTATRLVDMESSYLTVEFFRKLPQEVEKGGNPAAPAMDRYTEAHLRRIGSNVSAYVGMVCDTLKNSIPKAVVYCQVREAKNCLLNHFYTQVGKKEGKQLLALLDEDPALMERREGCAKRLELYKSARDEIDAVSWA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
834	11	88			0.923564
835		11		88	0.923564
838			88	11	0.923564
888	85		14		0.993533
913		71		28	1.0
918	12		87		0.992554
965	77			22	0.999999
967		77	22		0.999999
968			22	77	0.999999
972		77		22	0.999999
973	77	22			0.999999
975		22	77		0.999999
981		11		88	0.923564
1139		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain