SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3463

Length: 1012 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3463 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	nuclease harbi1-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	80%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Phospholipase A2, active site	IPR013090	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
739			14	85	0.993533
750	14	85			0.993533
754	85		14		0.993533
758	14			85	0.993533
760		85	14		0.993533
762	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain