SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3428

Length: 1408 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3428 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uncharacterized protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN93

Fln msg:

Fln protein: MAVLSIRPLSSACQRPRCVVAEPSSQNWRKNRFCVQVSDPSSNFMIPLTLPHGRLMYHPEATRRISNYRGANNIFEDEEDLDEEEEDSSLDLFVQFVQTMLKKISRRARKAARSILPSAISPQLVGFSVNGLTTLTFLWMVKAFLQVVCTLGSIVFVAILILRGVWSAIAYIKINGKTNEDPWNGAQPAT*

Protein Length: 192

Fln nts: GCTTTCGTCTGCCATTACTAATCATATTTCTGAAAATTGAAAACCACGTCATCATACGGAACCCTAGGTGGCAAACGCAAAATTGACTTCTTCCAGACGCTGATGCAACGGAAGAGCACATGACAACATCACAGAATCTCAGATGATTCTGATTCCTTTACCCTTTTAGGTTATCAAATTATCTATTTACTATAATTCTGAAACCCATATTACCCAATTTTTCTTTGCTGATCATTGTATGAAGCC_-_ATGGCCGTGCTTTCAATCCGGCCATTGAGCTCGGCGTGCCAAAGACCGAGATGCGTCGTTGCAGAACCGAGTTCGCAAAATTGGAGGAAAAATAGATTCTGCGTGCAAGTATCTGATCCGTCCTCTAATTTTATGATCCCGCTAACATTACCTCATGGACGTTTAATGTACCATCCTGAGGCCACCAGGAGAATTTCCAATTACCGCGGGGCAAATAATATTTTTGAAGATGAAGAGGACCTCGATGAAGAGGAAGAAGACAGTAGCCTTGATTTGTTCGTACAATTTGTACAAACGATGCTGAAGAAGATTTCCAGGAGAGCAAGGAAAGCTGCCAGATCAATATTGCCTTCTGCAATATCACCACAATTGGTTGGATTCTCTGTAAATGGTCTAACTACATTGACATTTCTTTGGATGGTCAAGGCATTTCTTCAGGTGGTGTGCACTCTTGGAAGTATAGTTTTTGTTGCAATTTTAATTCTTAGGGGAGTTTGGTCAGCAATTGCATACATAAAGATAAACGGAAAAACAAACGAGGATCCATGGAATGGTGCACAGCCTGCAACTTAA___CTACTAATGGATACTTCCCAGCCTTCAATAAAACGTGTAATTCTTTATCCAGTGATCTTGGATACCAATGGTTCCATGAAATTTTATAGCTTTTGTAATCATAAAGTCTGCTTCTTGTCAGCAACAAAGAAGGAAAGTCAGCTAACGAGTATTTTGTATATTGTAATCATATGTTTCCTTCTTGTCATCAACAAAGATTGGAAAGCCAGCTCACGAGTATTTGGTATATCTTTCTACACAGTTTAGATTGCATTGTTGTGATTTGTTGTCTTCTTGCCAAAGAAGAGTAGAAGAGAATACAACAGATTTCATAGACCAAATGGTCTATGGGATTTGGAGGTTACATCTTTAGGAGGGCACGTCTTTGCAGAGAATTAAAACAGCAGTACTTGTAAAAGAAAAGTAGATTCAAGCTGGATGCCTCATAATTACTATAGGAAGAAAGTTGCTAATGTCATTGCTTCAGAACCTGTAACATTCATTGGGGAGCGTTAACAGTTTATCTTGAAACTATGAATGCTGTATATTTCATCTGATGCTTGTTGAAATTCTAGTGTTGCAATGACTACAATAGTTCTTCACAATTGAT

Fln Alignment:

Contig3428___MAVLSIRPLSSACQRPRCVVAEPSSQNWRKNRFCVQVSDPSSNFMIPLTLPHGRLMYHPEATRRISNYRGANNIFXXXXXXXXXXXXXXXXLFVQFVQTMLXXXXXXXXXXXXXILPSAISPQLVGFSVNGLTTLTFLWMVKAFLQVVCTLGSIVFVAILILRGVWSAIAYIKINGKTNEDPWNGAQPAT
A9NN93______________MGVLPIRSLSSACQRPRFVVAEPNSLKWRKNRLCVQVSDPSSNFRTPLALPHGRLMYHPEATRRISNYRGANNIFEDEDDLDEEEEDSSLDLLVQFVQTMLKKISRRARKAARSILPSAISPQLVGFSVNGLTTLTFLWMVKAFLQVVCTLGSIVFVAILLLRGVWSAIAYIKINGKTNDGSWNGAQPAT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1070		6		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain