SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3424

Length: 1217 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3424 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] dbj\|BAB03022.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD44649.1\| unknown protein [Arabidopsis thaliana] gb\|AEE76847.1\| Core-2/I-branching beta-	-	-	1.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein	-	-	5.11472e-34	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	5.11472e-34	68%
Blast2go	membrane	GO:0016020	Cellular Component	5.11472e-34	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.11472e-34	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 14	IPR003406	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
592		77	22		0.999999
594	77		22		0.999999
595	77			22	0.999999
596			22	77	0.999999
597	22			77	0.999999
598		22		77	0.999999
601	77	22			0.999999
602	77	22			0.999999
606			22	77	0.999999
611	22			77	0.999999
613	77		22		0.999999
615	77	22			0.999999
626	85		14		0.993533
628			14	85	0.993533
631	14	85			0.993533
632		85	14		0.993533
638	85		14		0.993533
641		14	85		0.993533
643	14			85	0.993533
644		14		85	0.993533
645			14	85	0.993533
657	85		14		0.993533
723		12		87	0.992554
724	85	14			0.993533
728			85	14	0.993533
734	83		16		0.994512
749		80		20	0.995493
751	20	80			0.995493
752	80			20	0.995493
754	80		20		0.995493
756	80	20			0.995493
757		20	80		0.995493
758	80	20			0.995493
760	80			20	0.995493
761			20	80	0.995493
763	20			80	0.995493
980	88			11	0.923564
981	88		11		0.923564
982	11			88	0.923564
983		88	11		0.923564
985			11	88	0.923564
986	11	88			0.923564
990			11	88	0.923564
991		11		88	0.923564
995			11	88	0.923564
996			11	88	0.923564
998		11		88	0.923564
1001	88		11		0.923564
1002	11			88	0.923564
1003		11		77	0.968132
1035	14	85			0.993533
1036		85	14		0.993533
1038		85	14		0.993533
1040	85	14			0.993533
1044		14		85	0.993533
1045		14	85		0.993533
1047	16			83	0.994512
1048			16	83	0.994512
1049			16	83	0.994512
1050	16			16	0.988813
1052	16			83	0.994512
1054	83		16		0.994512
1056	83	16			0.994512
1057		83	16		0.994512
1122		33		66	0.997452
1123		33		66	0.997452
1124		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
436	448	TAAA TAAA TAAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain