SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3413

Length: 1969 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3413
CGTCGTGACCTTGGCTGTCACTCAAGGTTCTTTCTGGTTTTTAAAATCGAAGGTTTGACCAGCTTTGGAACAAGGCTCAATCAATCAAAGAGGGTGGAGGAAAGGAAGCTTCATTGAAAGCGCATGATACAAGGCCAGTCTTTCTCCTCTTAATGTGAAGACAGAGACTTCTGGTGGTATGGGTTGTGACTTTCCAGGAACGAAGATTTGTATGATACTGTGTCCTCCTCATCTTCGTTTTTGTGCCCCATATATACGTCGTTGCCTTGGTTAGTTCTTCTTAAGATTCATTTCAATTTGAATAGCGGAGAGATATTTCGAGTTCTGAAAGTGGGTATCTGCAGTGAATTTGACGGTGTCAATTGAGATTGGCGGTGCGTCACACATATGTGTTATGATCTCCAACGCGGAGAATAGCTCCATGGCATCCTCTAAGCCTAAAGGAAAGATGGAGTTCTTCACTAGGATTAAGATGGCAGCTGGCTTCACTCCATCCTCATCTGATACAGGAAAAGGACGTTGCAAGTTACCAAACAATAAAGTAATGCATGGATTTCATTTAGTGAAGGGTAAAACAAGGCATGATATGGAGGACTACCATGTCGCAGAGTATAGGCATGTAGAAGATCATGATTTGGGGCTTTTTGCTATCTTTGACGGACATTTGGGACATGGCGTCCCATGTTACTTGCAATCAAATCTTTTTGACAACATTTTAAATGAGCCGAAGTTCTGGACAGACCCAGAAAGTGCCATCAAGAATGCATACAACCGGACTGATGGGAAAATCTTAGCAAAGGCAGCTGATTTAGGGCCCGGTGGCTCCACAGCAGTCACTGCTATTTTAGTTGATGGGAAAAAACTCTTTGTAGCAAATATAGGGGATTCCAGGGCTGTTATATGTAAAAATGGCAATGCTATTCAGCTGACTGTTGATCATGAGCCAAGTATTGAACGCCAAAACATCGAGAAGAAGGGTGGATTTGTGACACTCCTGCCAGGAGATGTACCTCGAGTTAATGGTCAGCTTGCTGTAGCTCGTGCGTTTGGTGACAGGAGCCTGAAGCAACATTTAAGTTCAGAACCAGATGTGAGAGACACAACCATAGATGCAACCACAGAATTTCTCATTTTGGCTAGTGATGGATTGTGGAAGGTCATGAAAAATCAAGAGGCTGTTGATTTGGTTAGAAAAATCAAGGACCCTCAGGTGGCAGCCAAGTGTCTGACTGAAAATGCAGTTGCAAGAAAGAGCAAAGATGATATTTCATGCATTGTTGTGCGCTTCCAGCAGTAAAAATGGATTTACATTTGTACCAGTGATTGGATGCAGAAATTTTCCAGAAACAGTTCGTAGATTGGTCGAACCTTCCCCTCAGTATTTTTTGGTTGAATTCCAAGCAGCATCCAATATTATAAGTATTTTCACCTTCTGCTGCTGCTTTTGCTGTACCTAGTACGAAGATTCCCCGCACTTTATAAACTCAAACGGGATGGCTAGTTTCACTTTCAAAGCCATTGAGAATTTGTTTGCTTAAATATAATTATCTTGTCATGCTTTACAGAAACATCACTGAGACATGAAAACTCAGTGAATGACCAATGGACTCTTTTGTGTTGGTGATCGTGCTACGATCAGCAATATCAAGAACTCTATTAAACCAAAGTGCCCCCTCCAGGCTCTGTACATGCTTCATGGCTGAAGCCTATATAAATATCTTAGAAATAATGGACTTCAAACCATTGCATTGGTTTCAAAATACCATGTTACTGCAGTTGTTGAAACAGTAATATTTATTTGATAGAAATAATGGACTCCTAACCATTGCATTGGTTTCAAAATGCCATGTTATTACAGTGGTTGAAACAGTAATAATTATTTGTTATTATCTCCTTCGTCATTTGAAACTTGTTTCAGAGCATGGCAGATGCTCAGTCAGTAATGCTCGTTTGATATGGTGTTAATTAG

Ace file of the UniGene sp_v2.0_unigene3413 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RL74_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein phosphatase	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7X5

Fln msg:

Fln protein: MISNAENSSMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ*

Protein Length: 302

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTCTTTCTGGTTTTTAAAATCGAAGGTTTGACCAGCTTTGGAACAAGGCTCAATCAATCAAAGAGGGTGGAGGAAAGGAAGCTTCATTGAAAGCGCATGATACAAGGCCAGTCTTTCTCCTCTTAATGTGAAGACAGAGACTTCTGGTGGTATGGGTTGTGACTTTCCAGGAACGAAGATTTGTATGATACTGTGTCCTCCTCATCTTCGTTTTTGTGCCCCATATATACGTCGTTGCCTTGGTTAGTTCTTCTTAAGATTCATTTCAATTTGAATAGCGGAGAGATATTTCGAGTTCTGAAAGTGGGTATCTGCAGTGAATTTGACGGTGTCAATTGAGATTGGCGGTGCGTCACACATATGTGTT_-_ATGATCTCCAACGCGGAGAATAGCTCCATGGCATCCTCTAAGCCTAAAGGAAAGATGGAGTTCTTCACTAGGATTAAGATGGCAGCTGGCTTCACTCCATCCTCATCTGATACAGGAAAAGGACGTTGCAAGTTACCAAACAATAAAGTAATGCATGGATTTCATTTAGTGAAGGGTAAAACAAGGCATGATATGGAGGACTACCATGTCGCAGAGTATAGGCATGTAGAAGATCATGATTTGGGGCTTTTTGCTATCTTTGACGGACATTTGGGACATGGCGTCCCATGTTACTTGCAATCAAATCTTTTTGACAACATTTTAAATGAGCCGAAGTTCTGGACAGACCCAGAAAGTGCCATCAAGAATGCATACAACCGGACTGATGGGAAAATCTTAGCAAAGGCAGCTGATTTAGGGCCCGGTGGCTCCACAGCAGTCACTGCTATTTTAGTTGATGGGAAAAAACTCTTTGTAGCAAATATAGGGGATTCCAGGGCTGTTATATGTAAAAATGGCAATGCTATTCAGCTGACTGTTGATCATGAGCCAAGTATTGAACGCCAAAACATCGAGAAGAAGGGTGGATTTGTGACACTCCTGCCAGGAGATGTACCTCGAGTTAATGGTCAGCTTGCTGTAGCTCGTGCGTTTGGTGACAGGAGCCTGAAGCAACATTTAAGTTCAGAACCAGATGTGAGAGACACAACCATAGATGCAACCACAGAATTTCTCATTTTGGCTAGTGATGGATTGTGGAAGGTCATGAAAAATCAAGAGGCTGTTGATTTGGTTAGAAAAATCAAGGACCCTCAGGTGGCAGCCAAGTGTCTGACTGAAAATGCAGTTGCAAGAAAGAGCAAAGATGATATTTCATGCATTGTTGTGCGCTTCCAGCAGTAA___AAATGGATTTACATTTGTACCAGTGATTGGATGCAGAAATTTTCCAGAAACAGTTCGTAGATTGGTCGAACCTTCCCCTCAGTATTTTTTGGTTGAATTCCAAGCAGCATCCAATATTATAAGTATTTTCACCTTCTGCTGCTGCTTTTGCTGTACCTAGTACGAAGATTCCCCGCACTTTATAAACTCAAACGGGATGGCTAGTTTCACTTTCAAAGCCATTGAGAATTTGTTTGCTTAAATATAATTATCTTGTCATGCTTTACAGAAACATCACTGAGACATGAAAACTCAGTGAATGACCAATGGACTCTTTTGTGTTGGTGATCGTGCTACGATCAGCAATATCAAGAACTCTATTAAACCAAAGTGCCCCCTCCAGGCTCTGTACATGCTTCATGGCTGAAGCCTATATAAATATCTTAGAAATAATGGACTTCAAACCATTGCATTGGTTTCAAAATACCATGTTACTGCAGTTGTTGAAACAGTAATATTTATTTGATAGAAATAATGGACTCCTAACCATTGCATTGGTTTCAAAATGCCATGTTATTACAGTGGTTGAAACAGTAATAATTATTTGTTATTATCTCCTTCGTCATTTGAAACTTGTTTCAGAGCATGGCAGATGCTCAGTCAGTAATGCTCGTTTGATATGGTGTTAATTAG

Fln Alignment:

Contig3413___MISNAENSSMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ
D5A7X5______________MISNGENSSMASSKAKGKKEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVIHGFHLVKGKTRHDMEDYHVAEYRHLKDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPVGAIKNAYNWTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKSGTAIQLTVDHEPSIERQTIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTSIDATIEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
1134		8		92	0.999718
1135		8	92		0.999718
1137	8	92			0.999718
1138	8		8	84	0.998474
1141	8			92	0.999718
1142	4	8	88		0.999262
1143	8		4	88	0.999262
1144	3	7	88		0.999079
1324	88			11	0.923564
1335	88		11		0.923564
1382	81			18	0.999994
1383			18	81	0.999994
1385		9	18		0.999994
1387		81	18		0.999994
1389		18		81	0.999994
1393	20			80	0.999996
1394	20			80	0.999996
1396			22	77	0.999999
1398		22		77	0.999999
1402		77	22		0.999999
1404		11	22	66	0.999999
1409	14			85	0.993533
1410	85	14			0.993533
1412	85			14	0.993533
1439	16			83	0.994512
1440		16	83		0.994512
1441	16		83		0.994512
1443	83			16	0.994512
1578	90		9		0.999872
1689	55	20		25	1.0
1690	55	20			1.0
1691		20	80		1.0
1692	85	15			1.0
1694	70		25	5	1.0
1695			57	42	1.0
1696	68		31		1.0
1701	68		31		1.0
1705	37	6		56	1.0
1706	6		37	56	1.0
1708		6		37	1.0
1711	62	37			1.0
1713	40		60		1.0
1717	90	10			0.90298
1718	10			90	0.90298
1719	90	10			0.90298
1720			10	90	0.90298
1722		10		90	0.90298
1727		88		11	0.923564
1735		88		11	0.923564
1897		75		25	1.0
1898		75	25		1.0
1899	33			66	1.0
1900	8	25		66	1.0
1901	25	8	66		1.0
1902		8	33	58	1.0
1908	60	10	30		1.0
1912	33			66	1.0
1913		33	66		1.0
1915	33			66	1.0
1917	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain