SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3412

Length: 1842 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3412 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding protein [Medicago truncatula]	-	-	5.0e-20	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	65%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC97

Fln msg:

Fln protein: MDRYERPGYGRDAPPPGRRSPPGYQYYQGRERELDSYGPPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQTDRRDLLSSGREHDLDSYRTRMEGRDLLSSGREHDLHSYRPRIDSRDLISSVRDHELDSYRPLRTEGRALLPSERHYDDRDRDRDIPALSAGWRERDPLAGGRDLLRDKTINGTGGMHPNDFGGTIPGVGFKRVAIDSFDDTSLIGSGSRFDRGMGSLQEPLGRDEHGRDVAPTGGGADSAREPVLFIDGLPLDCTSREAAHIFRPFIGYKEVRIVHKEPKKPGGEKTLLCFVEFNDLRHAAIAREALQGYKFDEQDPNSGTLRISFSLYSSRKGSHHEEPRGGRYPNRGYRA*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTCACGCAATTGGGTGTTGTTGGGAGCCCTTCTCTATATAAACCCTAAACGTCGTGACCTTGGCTGTCACTCATTTTCACTTGAGGGAGACGAAGAAAACTGTCATTCTGCTGTGACATTGTGAGAGTAGAAGCGAAAGGCA_-_ATGGACCGCTATGAGCGGCCTGGCTATGGTAGAGACGCTCCCCCTCCTGGTAGAAGGTCTCCACCCGGTTACCAATACTATCAAGGAAGAGAACGCGAACTTGATTCCTATGGACCTCCTCACATGGAAGGACGTGATTTGCTGTCTGCAGGAAGAGAACGTGAACTTGACCCCTATGGACCTCCTCGTATGGAAGGGCGTGATTTACTATCTGCAGGTAGAGATCATCAACTTGATCCTTATGGACCTGCTCAAACAGACAGACGTGATTTACTATCCTCAGGCAGAGAACATGATCTTGACTCCTATAGAACTCGAATGGAGGGACGAGATTTATTATCTTCAGGCAGAGAACATGATCTTCACTCCTATAGGCCTCGAATAGACAGTCGAGATTTAATATCCTCAGTCAGAGATCATGAACTTGACTCCTATAGGCCTCTTCGCACAGAGGGACGGGCTTTATTGCCTTCAGAACGACACTATGATGATCGTGATCGCGATCGTGACATTCCTGCTCTTTCTGCTGGTTGGAGAGAGCGGGATCCTCTTGCAGGTGGCAGAGATTTATTAAGAGACAAGACTATCAATGGAACAGGTGGGATGCATCCAAATGATTTTGGAGGAACCATCCCTGGTGTTGGATTCAAGAGGGTTGCCATTGATAGCTTTGATGATACATCTCTGATCGGTTCAGGCTCACGATTTGATAGAGGCATGGGTAGCCTGCAGGAGCCTCTTGGTCGTGATGAACATGGTCGGGATGTTGCACCCACAGGTGGAGGTGCAGATTCTGCTCGAGAACCAGTACTGTTTATTGATGGACTTCCTTTAGATTGCACCAGTAGAGAAGCAGCTCATATCTTTCGTCCATTTATTGGATACAAAGAGGTGCGAATTGTCCATAAGGAGCCTAAAAAGCCTGGAGGAGAAAAGACCCTCCTATGCTTTGTTGAATTTAATGACTTAAGGCATGCTGCTATTGCTCGAGAGGCTTTACAGGGGTATAAATTTGATGAACAAGACCCCAATTCTGGGACTTTACGGATATCATTTTCACTATATTCTAGTCGCAAAGGTTCTCATCATGAGGAGCCACGAGGTGGACGCTATCCTAATCGTGGTTACAGGGCTTGA___TTTGTCCCACTGTAAATGTCTCTTTAATGGTTGAACTTCTGAAAGATGCAGCGCACAAACAATACTTGCAAAACATATAGATTTATGACATGAATAACATATATTGCCATTTAGCACATTGGAGGTGACTGCACTAGCTGCTGGTTACTTCAGGTATCTGTTGGATATTCCCTCTACCTTCCGTTTGTCTCTTTAAAAACTAAGAGTGTGATGACCTTCGTGTCGGGCCTCATTTTGGTACACGGGGATGTTTATTTTTATTTAATTGTGAGTTTAGACATTAGTAGAAGCCTTTTTGTTTGTGAGCTTTTGTTGAAACTTGGGTGGTTATACATCTTTATTACTGACGACTGAATGGATTTATATTAAATCCTTGTAATTTCAACTTTTAAGTGAAAAGAAAATTAATTCAACAAACCCTATTTAGTGAAAAACCTAGGAAGAAAACTTGTTGATTTCCTCCAATCTATTGTTAGACTGAATTAACTCTATTGTTAGATTGAATTTATTTCTACAGAAGTCTTCATAATGCATGGAAGTTTCTCTC

Fln Alignment:

Contig3412___MDRYERPGYGRDAPPPGRRSPPGYQYYQGRERELDSYGPPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQTDRRDLLSSGREHDLDSYRTRMEGRDLLSSGREHDLHSYRPRIDSRDLISSVRDHELDSYRPLRTEGRALLPSERHYXXXXXXXDIPALSAGWRERDPLAGGRDLLRDKTINGTGGMHPNDFGGTIPGVGFKRVAIDSFDDTSLIGSGSRFDRGMGSLQEPLGRDEHGRDVAPTGGGADSAREPVLFIDGLPLDCTSREAAHIFRPFIGYKEVRIVHKEPKKPGGEKTLLCFVEFNDLRHAAIAREALQGYKFDEQDPNSGTLRISFSLYSSRKGSHHEE
D5AC97______________MDHYERPGYGRDAAPASRRSPVGYQYYNGRERELDPYGAPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQIDRRDLFSSGREHDLDSYGTRMEGRDLLSSGRERDLDSYRPRLEGRDLLSSGRDHELDSYRSLRTDGRALLSSERHYDDRDRD--IPAVSAGWRERDPLIGGRDLFRDKTINGTGGMHANDFEGTVLGIGSKRVHSASFDDTSLIGSGSRFDRGMGSLQGSLGRDGHGRDIALTGGGADSAREPVLFIDGLPLDCTVREAAHIFRPFIGFKEVRVVHKEPKRPGGEKSVLCFVEFTDLRHAAIAREALQGYKVDEHDPNSGTLRISFSLYSSRKGSHHEE

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
442	88	11			0.923564
612		96		3	0.99989
618		2	97		0.930363
743		2	97		0.977151
750	4			95	0.999991
751		3	1	95	0.911382
752			4	95	0.999991
753	3			96	0.987242
787			5	92	0.999982
790	5		94		0.999996
794		96	3		0.99245
818	93	4			0.970804
822	95		4		0.995482
825		4		95	0.995482
830	4			95	0.996252
833		2	4	93	0.98137
836	4	2	2	91	0.929335
841	4			93	0.98137
855			92	7	1.0
857	92			2	0.991359
868			5	94	0.9982
869	91		2		0.993509
870	94	5			0.998397
951	10			89	0.999919
959	10		89		0.999919
961			10	89	0.999919
1513	3		96		0.993037
1541		97		2	0.97849
1555	2	97			0.979771
1618	5	94			0.999993
1619	5	1	93		0.999969
1623		5	95		0.999992
1624	5		95		0.999992
1625	95	5			0.999992
1629		93	5	1	0.999965
1746	96	3			0.999865
1755	7		1	76	1.0
1758		8	73		1.0
1761	90			10	0.90298
1763	90		10		0.90298
1765	40	60			1.0
1767	90		10		0.90298
1768	90			10	0.90298
1770	40		60		1.0
1771		10		90	0.90298
1772	40	60			1.0
1773	60		10	30	1.0
1775		11	88		0.923564
1776	66	22			0.999999
1777	33	66			1.0
1778	11		66		0.999999
1779			25	75	0.996473
1781		25		75	0.996473
1783		25	75		0.996473
1785	25		75		0.996473
1786		25		75	0.996473
1787			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain