SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3407

Length: 1308 nt

Origin of reads: Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3407 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] dbj\|BAB03055.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM61362.1\| putative ethylene-forming enzyme [Arabidopsis thaliana] gb\|AAO64923.1\| At3g21420 [Arabidopsis thaliana	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	flavonol synthase flavanone 3-	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	67%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7S3

Fln msg: your sequence is longer than subject: 360 - 261

Fln protein: MLNAAVPYKEGDGSSQRFTVPIVQELASNHLLPERYIRSEDERPSLSNTPPQIGIPAIDMKLLLGENDCRPKEMEKLAMACQEWGFFQVVNHGISGSLMERMKRVTREFVLRPLQEKVEYAVQEHEGYGQAFVFSEDQQLDWSDLLYLTIMPAEKRKMKFWPAKPVEFRETVEEYAIAVQRLSDQMLYLMAENLGLKSPDLFVSMFREISQSMHYYPPCPRPDLVIGLSSHTDGGGITILLQEDGVVGLQVRKDGDWIPVQPIPGGLVINIGDMVEVMSNGRYKSIEHRAVANKEKDRISIAAFCNPEKEAEIGPAPELINESNPLNYRTFQRSKYLENYFLEGKKAIDFAKINPSVAA*

Protein Length: 361

Fln nts: GTGGATAGAATCGGTTTGGGATTTAAATCATTAGGAATTGCTGTGTTGTAGTCACAGTAGCTGCTGAGCTGAGTTTGAGTGGATAGAATCGGTTTGGGATTTAAATCATTAGGAATTGCTGTGTTGTTTTGAGAAAG_-_ATGTTGAATGCTGCAGTGCCATACAAGGAAGGCGATGGATCTTCCCAGAGGTTTACAGTCCCAATTGTGCAGGAATTGGCTTCCAACCACCTTCTTCCTGAAAGATATATCAGATCAGAGGATGAGAGACCATCTCTATCTAATACTCCCCCTCAGATTGGCATCCCTGCCATTGATATGAAGTTGCTGTtGGGAGAGAATGACTGCAGGCCCAAAGAGATGGAGAAACTTGCCATGGCGTGCCAGGAGTGGGGATTCTTTCAGGTGGTGAATCATGGGATTTCTGGTTCTCTGATGGAGCGAATGAAGAGAGTTACCAGGGAGTTCGTCCTGCGACCGTTGCAGGAAAAGGTAGAGTACGCAGTGCAAGAGCACGAAGGCTATGGTCAGGCCTTTGTATTCTCCGAGGACCAGCAGCTGGACTGGTCAGACCTCCTCTATCTTACCATCATGCCTGCAGAGAAGAGAAAAATGAAGTTCTGGCCTGCAAAGCCTGTAGAGTTCAGGGAAACTGTGGAGGAGTATGCCATCGCGGTTCAAAGGCTTAGCGATCAAATGCTGTATCTAATGGCGGAGAATCTCGGTTTAAAATCCCCTGACTTGTTCGTCAGTATGTTCCGAGAAATCTCACAGTCAATGCATTACTACCCGCCCTGCCCACGACCAGATCTTGTTATAGGTTTGAGTTCTCACACTGATGGAGGAGGTATAACCATTTTACTGCAGGAAGATGGGGTTGTTGGGCTGCAAGTTCGTAAAGATGGTGACTGGATCCCAGTCCAGCCCATCCCCGGCGGTCTAGTTATCAATATCGGCGACATGGTAGAGGTAATGAGCAATGGAAGATACAAGAGCATAGAGCACCGCGCTGTGGCTAACAAGGAGAAAGATCGAATTTCAATTGCAGCGTTTTGCAATCCAGAGAAAGAGGCAGAAATTGGTCCTGCTCCTGAACTTATAAATGAGTCCAATCCCCTCAATTACAGAACCTTCCAGAGAAGCAAATATCTTGAAAATTATTTCCTTGAAGGGAAGAAAGCCATTGATTTTGCAAAAATCAACCCTTCAGTGGCTGCTTGA___CTATCAATGTGGTTTATGCTCTAAACTGCCATAAGGTTCGTTGTACCCACCACTTTTACAATGTTATTTACAATAATATTTCCTTGAAGGG

Fln Alignment:

Contig3407___MERMKRVTREFVLRPLQEKVEYAVQEHEGYGQAFVFSEDQQLDWSDLLYLTIMPAEKRKMKFWPAKPVEFRETVEEYAIAVQRLSDQMLYLMAENLGLKSPDLFVSMFREISQSMHYYPPCPRPDLVIGLSSHTDGGGITILLQEDGVVGLQVRKDGDWIPVQPIPGGLVINIGDMVEVMSNGRYKSIEHRAVANKEKDRISIAAFCNPEKEAEIGPAPELINESNPLNYRTFQRSKYLENYFLEGKKAIDFAKINPSVA
D5A7S3______________MEQMKRIAREFVLLPLQEKVEYAVQEHEGYGQAFVFSEDQQLDWSDLLYLTIMPAEKRKMKFWPAKPVEFRKTVEEYAIQVQRLSNQMLYLMAENLSLNAPDRFVHIFGEISQSMHYYPPCPRPDLVIGLSSHTDGGGITILLQEDGVVGLQVRKDGDWIPVQPIPGGLVINIGDMVEVISNGKYKSIEHRAVANKEKDRISIAAFCNPEKEAEIGPACELINESNPLNYRNFKRSEYLESYFLEGKKAIEFAKINPSSA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
340	14		14	0.984337
389	14	85		0.993533
799		14	85	0.993533
837	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain