SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3406

Length: 2235 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3406
ATGGGGACCACAGCTCCTGCAATAGCCTTGAGAACTGAAAATTTTCTTTATCTCATTGGATTTACAAGTTGCAGATCTGCCGTTAATCTCAATGGATTTACAGCTGCCGTTTGCCATTGCAGATCTGCGAATGATCGGCTACCTTGTGGTGACCATCATATCGGCTTATCTGATCTGCAGGCGACTTCGTCCTTCTGTGAAATTGCCGCCCGGTCCCCGTGCTTGGCCCATAATCGGGAACCTGAATCTCATGGGGAAATTACCCCACAGGTCGCTGGATCTACTCTCCAAAACATATGGCCCCCTCATGTATATGAGACTCGGATCCATGCCATGCGTGGTCGGCTCATCCGCTGAGATGGCCCGAGAGTTTCTCAAGACCCACGATCTCACATTCTCGTCCCGACCCCGTGTGGCGGCCGGGAAATACACTGTTTACAACTACTCCGACATCACCTGGTCTCCCTACGGAGAGCACTGGCGCCTCGCCAGGAAAATCTGCCTCATGGAGCTCTTCAGTGCCAAACGCCTCGAATCTTTCGAGTACATCAGAGTAGAAGAGGTCGCCCGGATGCTAAGTTCCGTGTTCGAAACCAGCCGGCAGGGCCTCCCTGTAGAAATCAGGGAAGAGACGACTAATGTGAGCAATAACATAATTTCTCGGATGGTTTTGGGACGAAGGTACTTGGACGAGAAGGCCGGGAACAAGATAAAGCCGGCGGAGTTTAGGGAGATGTGGGAGGAGCTGTTTGTGCTGAACGGGGTTTTAAATATTGGAGACTTTATACCGTGGCTTGCCTGGTTGGATCTCCAGGGTTACGTCAGGCGTATGAAGAAGCTGAGCAAGCGGTTGGATGTTTTCCTGGAGGAAGTGTTGGAAGAGCACGACAAGAGGAGGAAGAGCGTGAAGAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCACAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCGGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAGCCTGCAGAATCGCAGGGTACGACATTCCTGCGAACACGAGGTTGTTCGTCAACGTTTGGACTATCGGCCGGGACGGCAAGTTATGGGAGAACCCTGATGAGTTCATGCCAGAGAGATTCAAAGGGAGCACAGTGGACGTGAAGGGCAGAGATTACGAGCTCCTGCCATTTGGGTCGGGGAGGAGGATGTGCCCGGGATATAGTCTTGGAATCAAAGTAGTTCATTTGGGTTTGGCCAATCTCATCCATGGATTCCACTGGTGCCAGCCTGATGGACAGAACCCTGAGGACTTGGACATGGGCGAGACCTTTGGGTTGTCTACTCCTAAAACAATCCCTCTCGTTGCCATGGCCCGACCTCGCCTGCCTTCTCATCTCTATAACTTCAATTCTTCCCACACTTAAAGAGTGCTCTCTGTGTATCTTCAAATAAAATGGGCCTCTGTTTATGGAGAAGTAGATCTGCATATTGTATCAGTTGCTATAACAGTTAATCTACTATCAGTTCCCATTATAGCAGTGTACCATGGCCGAATGCACCCAATCCAATTTTATCCCAAGTTGGATAATGTACACAATCCAATCCGAACCTATCGAACTCTTCAGTTTACTTTTCCAGATTATTTTTCTGGGAGTGCCGCAAGTGTGTGGGGACGATGATGTAATGAGTGCCGTATAGTCGTGATGGTGGTAGAAAAGTAGAAAGATTCCAAATATCGTCATTTGATGTAATGAATGAATAGTTAAGGAGGTATCGTAATAACTGCTGTGGAAAAAGTTAAAGAAATTCAAAAGTATGATAATGTAATCCATGAATATGATGATATGATCAATATTGTTCGGGTGTTGATTGTAATGAGGAAGAAATAAAATTCATGAATTTACTTTATTTTGGGGGGAGGCGATGAGCAAATCTATATCCAGGCAAATCTCCTAACCCCCGAGGAATTCACCATCAGCTTGGATCTCATACAAAATTAAATTTGGGA

Ace file of the UniGene sp_v2.0_unigene3406 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9S5P8_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cytochrome p450	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	heme binding	GO:0020037	Molecular Function	77%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	77%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV76

Fln msg:

Fln protein: MDLQLPFAIADLRMIGYLVVTIISAYLICRRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDLLSKTYGPLMYMRLGSMPCVVGSSAEMAREFLKTHDLTFSSRPRVAAGKYTVYNYSDITWSPYGEHWRLARKICLMELFSAKRLESFEYIRVEEVARMLSSVFETSRQGLPVEIREETTNVSNNIISRMVLGRRYLDEKAGNKIKPAEFREMWEELFVLNGVLNIGDFIPWLAWLDLQGYVRRMKKLSKRLDVFLEEVLEEHDKRRKSVKNYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQACRIAGYDIPANTRLFVNVWTIGRDGKLWENPDEFMPERFKGSTVDVKGRDYELLPFGSGRRMCPGYSLGIKVVHLGLANLIHGFHWCQPDGQNPEDLDMGETFGLSTPKTIPLVAMARPRLPSHLYNFNSSHT*

Protein Length: 521

Fln nts: ATGGGGACCACAGCTCCTGCAATAGCCTTGAGAACTGAAAATTTTCTTTATCTCATTGGATTTACAAGTTGCAGATCTGCCGTTAATCTCA_-_ATGGATTTACAGCTGCCGTTTGCCATTGCAGATCTGCGAATGATCGGCTACCTTGTGGTGACCATCATATCGGCTTATCTGATCTGCAGGCGACTTCGTCCTTCTGTGAAATTGCCGCCCGGTCCCCGTGCTTGGCCCATAATCGGGAACCTGAATCTCATGGGGAAATTACCCCACAGGTCGCTGGATCTACTCTCCAAAACATATGGCCCCCTCATGTATATGAGACTCGGATCCATGCCATGCGTGGTCGGCTCATCCGCTGAGATGGCCCGAGAGTTTCTCAAGACCCACGATCTCACATTCTCGTCCCGACCCCGTGTGGCGGCCGGGAAATACACTGTTTACAACTACTCCGACATCACCTGGTCTCCCTACGGAGAGCACTGGCGCCTCGCCAGGAAAATCTGCCTCATGGAGCTCTTCAGTGCCAAACGCCTCGAATCTTTCGAGTACATCAGAGTAGAAGAGGTCGCCCGGATGCTAAGTTCCGTGTTCGAAACCAGCCGGCAGGGCCTCCCTGTAGAAATCAGGGAAGAGACGACTAATGTGAGCAATAACATAATTTCTCGGATGGTTTTGGGACGAAGGTACTTGGACGAGAAGGCCGGGAACAAGATAAAGCCGGCGGAGTTTAGGGAGATGTGGGAGGAGCTGTTTGTGCTGAACGGGGTTTTAAATATTGGAGACTTTATACCGTGGCTTGCCTGGTTGGATCTCCAGGGTTACGTCAGGCGTATGAAGAAGCTGAGCAAGCGGTTGGATGTTTTCCTGGAGGAAGTGTTGGAAGAGCACGACAAGAGGAGGAAGAGCGTGAAGAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCACAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCGGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAGCCTGCAGAATCGCAGGGTACGACATTCCTGCGAACACGAGGTTGTTCGTCAACGTTTGGACTATCGGCCGGGACGGCAAGTTATGGGAGAACCCTGATGAGTTCATGCCAGAGAGATTCAAAGGGAGCACAGTGGACGTGAAGGGCAGAGATTACGAGCTCCTGCCATTTGGGTCGGGGAGGAGGATGTGCCCGGGATATAGTCTTGGAATCAAAGTAGTTCATTTGGGTTTGGCCAATCTCATCCATGGATTCCACTGGTGCCAGCCTGATGGACAGAACCCTGAGGACTTGGACATGGGCGAGACCTTTGGGTTGTCTACTCCTAAAACAATCCCTCTCGTTGCCATGGCCCGACCTCGCCTGCCTTCTCATCTCTATAACTTCAATTCTTCCCACACTTAA___AGAGTGCTCTCTGTGTATCTTCAAATAAAATGGGCCTCTGTTTATGGAGAAGTAGATCTGCATATTGTATCAGTTGCTATAACAGTTAATCTACTATCAGTTCCCATTATAGCAGTGTACCATGGCCGAATGCACCCAATCCAATTTTATCCCAAGTTGGATAATGTACACAATCCAATCCGAACCTATCGAACTCTTCAGTTTACTTTTCCAGATTATTTTTCTGGGAGTGCCGCAAGTGTGTGGGGACGATGATGTAATGAGTGCCGTATAGTCGTGATGGTGGTAGAAAAGTAGAAAGATTCCAAATATCGTCATTTGATGTAATGAATGAATAGTTAAGGAGGTATCGTAATAACTGCTGTGGAAAAAGTTAAAGAAATTCAAAAGTATGATAATGTAATCCATGAATATGATGATATGATCAATATTGTTCGGGTGTTGATTGTAATGAGGAAGAAATAAAATTCATGAATTTACTTTATTTTGGGGGGAGGCGATGAGCAAATCTATATCCAGGCAAATCTCCTAACCCCCGAGGAATTCACCATCAGCTTGGATCTCATACAAAATTAAATTTGGGA

Fln Alignment:

Contig3406___MDLQLPFAIADLRMIGYLVVTIISAYLICRRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDLLSKTYGPLMYMRLGSMPCVVGSSAEMAREFLKTHDLTFSSRPRVAAGKYTVYNYSDITWSPYGEHWRLARKICLMELFSAKRLESFEYIRVEEVARMLSSVFETSRQGLPVEIREETTNVSNNIISRMVLGRRYLDEKAGNKIKPAEFREMWEELFVLNGVLNIGDFIPWLAWLDLQGYVRRMKKLSKRLDVFLEEVLEEHDKRRKSVKNYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQACRIAGYDIPANTRLFVNVWTIGRDGKLWENPDEFMPERFKGSTVDVKGRDYELLPFGSGRRMCPGYSLGIKVVHLGLANLIHGFHWCQPDGQNPEDLDMGETFGLSTPKTIPLVAMARPRLPSHLYNFNSSH
A9NV76______________MDLLSIFALPYLP-----VLAIVSVYLIYMRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDRLSKTYGPLMYIRLGSIPCVVASSAEMAREFLQTHDLTFSSRPQVASGKYTTYNYSDITWSPYGDYFRLARKVCLMELFSAKRLESFEYIRVEEVARMLGSVFETCQRGLPVEIRKETYGVSNNIISRMALGRRYFDKEAGNMMRLEELKEMLEEFFLLNGVFNIVDFIPWLGWLDLQGYVGRMKKLSERLDVFLEEVVEEHDRRRKGVENYVAKDMMDVLLKQADDPQLNLSRIKVKAFTLDIIAGGTETSATLVEWGLSELLKKPEMLERATKELDRVVGRERWVEEKDMGGLEYVQWIVKETMRLHPVAPLLVPHLSTQRCRIAGYDIPANTRVFVNVWSIGRDDQSWENPNEFRPERFKGSTVDVMGRDYELLPFGSGRRMCPGNSLGLKVVQIALANLIHGFQWKLPDGQSPKDLDMGEIFGLSTSKTCPLVAMARPRLPSHLYNFNSSH

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
2028		75		25	0.996473
2040	75		25		0.996473
2064		85	14		0.993533
2148		14	85		0.993533
2151	14			85	0.993533
2222		20	80		0.995493
2223	20	80			0.995493
2225			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain