SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3366

Length: 2348 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3366
CGTCGTGACCTTGGCTGTCACTCAATATATACTGCCTTTTAAATCCATGCATAGAAATACAACTGTTGATGACAAAAAGTTAAACAATGGAACCGGTCAAGATGTGAAAGGATCCCAGAACAGTGAGTTAGTGGAGATCACGACTGCAAGTCATGCAAAGATTACAACACTGGATCCTGAGGCTGCTCCTGGTTGTGAAATTAAGCCAAAATCAATTAATCGTTCCATAGAAATTGATGAGTGCAGTGAATTATCTAGCCTATCCGAGTCAGAAGTGGCTTCATATATAGCTACCAGTAGCCTATCCGAGTCAGAAGTGGCTTCATATATAGCTACCAGTTCGGTGACAGCAGTCGTGGCTGCTGAGGAGGAAACAAAGCAAGCCGTTGCAAATGATTTACAGTCGATACATTCTTCTCCCTGTGAATGGTTTATCTGTGATGACAAAAGCACTTGTACTCGACTTTTCATTATTCAGGGTTCTGACTCCTTGGCTTCCTGGAAAGCAAACTTATTTTTTGAGCCTATCAAATTTGAGGGGTCTGAAGTGTTTGTACATAGAGGAATTTATGAAGCTGCCAAGGGTATATATGAACAAATACTCCCCGAAGTTCATGCTCATTTAAAAACATGCGGGGAGGCTTCACGCTTTCGTTTTACGGGGCATTCATTGGGAGGAAGTCTTTCTGTGTTACTAAATTTGATGCTTCTGATAAGAGGAGTGGTGCCATTGTCTTCGTTGCTGCCAGTTATAACATTTGGATCACCCTGCATAATGTGTGGAGGAGATTATCTACTTGAAAAGCTAGGCCTATCCACCAGTCATGTACAATCTATCATAATGCACAGGGATATTGTACCGCGGGCCTTTTCATGTCATTATCCTGATCATATTGCTGAAATTCTAAAAAGGCTTAATGCCAATTTTCGCAATCACCCTTGTCTCGACAGTCAGAGGCTTTTGTATGCCCCAGTGGGACAGTTGCTAATTTTACAACCAGATGACAGAGTTTCTCCCACTCACCATTTACTTCCGACTGGCTGTGCTCTGTATGTTCTTGGTCACTTTATGTCCACTGAAATTGACAGTGAGCCATCAAGGGCAGTTCAACTGCGGGCTGCTCAAATTGAATTTTTGAATTCTCCCCACCCACTTGAAACCTTGAGCGATCCAGGTGCATATGGTCTAAAAGGATCAATATGTCGAGATCATGATTCTCGAAATTACTTGAAAACGATTACTGCTGTGCTTCGTCATGAATTGAAGCGTCTCCGAAGGTTGGAGAGAGGACAGAGAAGACAGATATGGTGGCCTCTTGTCATCACAGAATCCTCTATGACGTTACAGAGAAGTTCCAAAGCAAGCATTGGCATGCCAGTACACAGAATTTCGAGAGAAAGTATTGGCATGGGTAGCAAAAAATTTGTTGGTGCCGTGAGTAGCATCAGCAGTGTCTCATATGAAGCACCTAGACGATTTGAGTTTCCTATTCAAATTGGTGTTCTCCTTCGTAGGAGTAAAGCTACACTTGGACGATTCACCAGATTAGTTGCGTCTCAGCATATGCAGATGGGTCTGTTGTTTTGTTATCTGGTCGTATGCTCATTGTACAAATATGTGGCAAAATTTATTCATAAGTTTATTTTAGTGTTATATGTCTTATGCTTTTTGCTTTTGCTGGTGCTACCTTACTCACCCTTGGCAAAAATGCTAATGCCCAATTAGCATGACTTCGTTTTTGAAGTCTGAGACGAAGCCATAGTGAGAATGTCGATGTCTTATGACTTCATTTCTGAAGTCTGAGAACGAAGCCATAGTAATGTATTGTGCCAGAATGTAAATCTCTATATAGAAGTCTGAGAACAAAGCCATAGTGACAATGTGGATGTCTTCTTGTACAAGAATGTAAATCCCTAGATAGCATGGTATCATGTTTCAGCCCTTAGTTTTACCAAGCTAGGATGAGAATGTGGATATAGCATGGAGTTACATTTCTGCTGTCAATTATACCAGGATGTCGATGCCAAAGTAACTTGATTGGTAGAATGGAGTCATAATTAACATGGAGAGTCACTTCTGAGCCTTGATCTTCACCAGATTAAAATCAAAATCGCAAACAATGAAGCTCCCAAGTGAGGAGTCGAAAACCAACCAGCTTCCAATTGAGAATCAGCATGCACAGCAAAATCATGCGAGTGCCATTCCCTCTCGCAATTATCCAGTGAGCTTGAATATTATTTTCGTGTCTCAGGTATCCGGCGAGCTTCATGTTCTAAAGGGATCAAGGACATCCTCAGAAGATTCTTCGTATGGATTGGACTTTCTTTCAATCTGTTTGAATTCTTGA

Ace file of the UniGene sp_v2.0_unigene3366

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Triacylglycerol lipase, putative n=1 Tax=Ricinus communis RepID=B9RNG5_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	55%
Blast2go	triacylglycerol lipase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	72%
Blast2go	Metabolic pathways	01100		0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	72%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Lipase, class 3	IPR002921	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HZ90

Fln msg: your sequence is shorter than subject: 575 - 697

Fln protein: VVTLAVTQYILPFKSMHRNTTVDDKKLNNGTGQDVKGSQNSELVEITTASHAKITTLDPEAAPGCEIKPKSINRSIEIDECSELSSLSESEVASYIATSSLSESEVASYIATSSVTAVVAAEEETKQAVANDLQSIHSSPCEWFICDDKSTCTRLFIIQGSDSLASWKANLFFEPIKFEGSEVFVHRGIYEAAKGIYEQILPEVHAHLKTCGEASRFRFTGHSLGGSLSVLLNLMLLIRGVVPLSSLLPVITFGSPCIMCGGDYLLEKLGLSTSHVQSIIMHRDIVPRAFSCHYPDHIAEILKRLNANFRNHPCLDSQRLLYAPVGQLLILQPDDRVSPTHHLLPTGCALYVLGHFMSTEIDSEPSRAVQLRAAQIEFLNSPHPLETLSDPGAYGLKGSICRDHDSRNYLKTITAVLRHELKRLRRLERGQRRQIWWPLVITESSMTLQRSSKASIGMPVHRISRESIGMGSKKFVGAVSSISSVSYEAPRRFEFPIQIGVLLRRSKATLGRFTRLVASQHMQMGLLFCYLVVCSLYKYVAKFIHKFILVLYVLCFLLLLVLPYSPLAKMLMPN*

Protein Length: 576

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATACTGCCTTTTAAATCCATGCATAGAAATACAACTGTTGATGACAAAAAGTTAAACAATGGAACCGGTCAAGATGTGAAAGGATCCCAGAACAGTGAGTTAGTGGAGATCACGACTGCAAGTCATGCAAAGATTACAACACTGGATCCTGAGGCTGCTCCTGGTTGTGAAATTAAGCCAAAATCAATTAATCGTTCCATAGAAATTGATGAGTGCAGTGAATTATCTAGCCTATCCGAGTCAGAAGTGGCTTCATATATAGCTACCAGTAGCCTATCCGAGTCAGAAGTGGCTTCATATATAGCTACCAGTTCGGTGACAGCAGTCGTGGCTGCTGAGGAGGAAACAAAGCAAGCCGTTGCAAATGATTTACAGTCGATACATTCTTCTCCCTGTGAATGGTTTATCTGTGATGACAAAAGCACTTGTACTCGACTTTTCATTATTCAGGGTTCTGACTCCTTGGCTTCCTGGAAAGCAAACTTATTTTTTGAGCCTATCAAATTTGAGGGGTCTGAAGTGTTTGTACATAGAGGAATTTATGAAGCTGCCAAGGGTATATATGAACAAATACTCCCCGAAGTTCATGCTCATTTAAAAACATGCGGGGAGGCTTCACGCTTTCGTTTTACGGGGCATTCATTGGGAGGAAGTCTTTCTGTGTTACTAAATTTGATGCTTCTGATAAGAGGAGTGGTGCCATTGTCTTCGTTGCTGCCAGTTATAACATTTGGATCACCCTGCATAATGTGTGGAGGAGATTATCTACTTGAAAAGCTAGGCCTATCCACCAGTCATGTACAATCTATCATAATGCACAGGGATATTGTACCGCGGGCCTTTTCATGTCATTATCCTGATCATATTGCTGAAATTCTAAAAAGGCTTAATGCCAATTTTCGCAATCACCCTTGTCTCGACAGTCAGAGGCTTTTGTATGCCCCAGTGGGACAGTTGCTAATTTTACAACCAGATGACAGAGTTTCTCCCACTCACCATTTACTTCCGACTGGCTGTGCTCTGTATGTTCTTGGTCACTTTATGTCCACTGAAATTGACAGTGAGCCATCAAGGGCAGTTCAACTGCGGGCTGCTCAAATTGAATTTTTGAATTCTCCCCACCCACTTGAAACCTTGAGCGATCCAGGTGCATATGGTCTAAAAGGATCAATATGTCGAGATCATGATTCTCGAAATTACTTGAAAACGATTACTGCTGTGCTTCGTCATGAATTGAAGCGTCTCCGAAGGTTGGAGAGAGGACAGAGAAGACAGATATGGTGGCCTCTTGTCATCACAGAATCCTCTATGACGTTACAGAGAAGTTCCAAAGCAAGCATTGGCATGCCAGTACACAGAATTTCGAGAGAAAGTATTGGCATGGGTAGCAAAAAATTTGTTGGTGCCGTGAGTAGCATCAGCAGTGTCTCATATGAAGCACCTAGACGATTTGAGTTTCCTATTCAAATTGGTGTTCTCCTTCGTAGGAGTAAAGCTACACTTGGACGATTCACCAGATTAGTTGCGTCTCAGCATATGCAGATGGGTCTGTTGTTTTGTTATCTGGTCGTATGCTCATTGTACAAATATGTGGCAAAATTTATTCATAAGTTTATTTTAGTGTTATATGTCTTATGCTTTTTGCTTTTGCTGGTGCTACCTTACTCACCCTTGGCAAAAATGCTAATGCCCAATTAG___CATGACTTCGTTTTTGAAGTCTGAGACGAAGCCATAGTGAGAATGTCGATGTCTTATGACTTCATTTCTGAAGTCTGAGAACGAAGCCATAGTAATGTATTGTGCCAGAATGTAAATCTCTATATAGAAGTCTGAGAACAAAGCCATAGTGACAATGTGGATGTCTTCTTGTACAAGAATGTAAATCCCTAGATAGCATGGTATCATGTTTCAGCCCTTAGTTTTACCAAGCTAGGATGAGAATGTGGATATAGCATGGAGTTACATTTCTGCTGTCAATTATACCAGGATGTCGATGCCAAAGTAACTTGATTGGTAGAATGGAGTCATAATTAACATGGAGAGTCACTTCTGAGCCTTGATCTTCACCAGATTAAAATCAAAATCGCAAACAATGAAGCTCCCAAGTGAGGAGTCGAAAACCAACCAGCTTCCAATTGAGAATCAGCATGCACAGCAAAATCATGCGAGTGCCATTCCCTCTCGCAATTATCCAGTGAGCTTGAATATTATTTTCGTGTCTCAGGTATCCGGCGAGCTTCATGTTCTAAAGGGATCAAGGACATCCTCAGAAGATTCTTCGTATGGATTGGACTTTCTTTCAATCTGTTTGAATTCTTGA

Fln Alignment:

Contig3366___NDLQSIHSSPCEWFICDDKSTCTRLFIIQGSDSLASWKANLFFEPIKFEGSEVFVHRGIYEAAKGIYEQILPEVHAHLKTCGEASRFRFTXXXXXXXXXXXXXXXXXIRGVVPLSSLLPVITFGSPCIMCGGDYLLEKLGLSTSHVQSIIMHRDIVPRAFSCHYPDHIAEILKRLNANFRNHPCLDSQRLLYAPVGQLLILQPDDRVSPTHHLLPTGCALYVLGHFMSTEIDSEPSRAVQLRAAQIEFLNSPHPLETLSDPGAYGLKGSICRDHDSRNYLKTITAVXXXXXXXXXXXXXXXXXXIWWPLVITESSMTLQRSSKASIGMPVHRISRESIGMGSKKFVGAVSSISSVSYEAPRRFEFPIQIGVLLRRSKATLGRFTRLVASQHMQM
F6HZ90______________DDLNSVLTTPCEWFICDDDRTGTRFFVIQGSESLASWQANLLFEPISFEGLDVPVHRGIYEAAKGIYEQMLPEVLSHLQARGERATFRFTGHSLGGSLSLLVNLMLLIRGVVPPSSLLPVITFGAPSIMCGGDHLLYELGLPRSHVQAVTMHRDIVPRAFSCNYPRHVAELLKAVNGNFRNHPCLNNQKVLYSPMGEFLILQPEEKHSPHHHLLPSGSGLYLLSRPVSDANDAER----QLLAAKLVFLNSPHPLEILSDSSAYGSDGTIQRDHDMKSYLRSVRSVIRQEQNSIRKTKREQRRKVWWPIVAPGGI-----HAGVIVGSPM-----VSNNMGQDQF----------------------NFSGILQTGRESLKRFSRLVASQHMHL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1394	85		14		0.993533
1412	14		85		0.993533
1426	85		14		0.993533
1518		71		28	1.0
1569		28		71	1.0
1586			83	16	0.994512
1631		25	75		0.996473
1988		33		66	0.997452
1996		33		66	0.997452
1997	66	33			0.997452
1999	66			33	0.997452
2001		66	33		0.997452
2002	66	33			0.997452
2006		33	66		0.997452
2008		33	66		0.997452
2010		33		66	0.997452
2072	75			25	0.996473
2266		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain