SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3360

Length: 812 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3360 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9TAG3_RICCO	-	-	3.0e-13	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	metal ion binding	-	-	3.70153e-31	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	3.70153e-31	80%
Blast2go	metal ion binding	GO:0046872	Molecular Function	3.70153e-31	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
234	33	66			0.997452
239	66		33		0.997452
248			50	50	1.0
252		75	25		0.996473
268	75		25		0.996473
269	75		25		0.996473
270	75		25		0.996473
282		75		25	0.996473
285	25		75		0.996473
287	75		25		0.996473
304	50		50		1.0
306		75		25	0.996473
307	50		50		1.0
324			75	25	0.996473
378		75		25	0.996473
411		25		75	0.996473
412	25		75		0.996473
456	80			20	0.995493
461		80	20		0.995493
492	80		20		0.995493
498		80		20	0.995493
501		80		20	0.995493
537		20		80	0.995493
540		60	40		1.0
544	80		20		0.995493
546			40	60	1.0
557		80		20	0.995493
564	20		60	20	0.99255
575		20		80	0.995493
579		80		20	0.995493
580		20		80	0.995493
618	75			25	0.996473
624		16		83	0.994512
630	16	83			0.994512
654	16			83	0.994512
655	16	33		50	1.0
657		66		33	1.0
659		83		16	0.994512
663		66		33	1.0
668			16	83	0.994512
677		16		83	0.994512
694	60		40		1.0
702	50	50			1.0
704	50			50	1.0
707	50			50	1.0
721	50	50			1.0
744	50		50		1.0
749	25		75		0.996473
754	50		50		1.0
757	50			50	1.0
790	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain