SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3328

Length: 1215 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3328 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase RNF25 [Arabidopsis thaliana] gb\|AAY57602.1\| RING finger family protein [Arabidopsis thaliana] gb\|AEE80040.1\| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana]	-	-	3.0e-39	42%
FL-Next	tr=RING finger protein, putative; Ricinus communis (Castor bean).	-	-	0.0	46%
Blast2go	ubiquitin-protein ligase rnf25	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RCZ1

Fln msg: your sequence is shorter than subject: 316 - 355

Fln protein: IARELAASPMLVSLCEAAIDRLSDMNHPEGNCSFCLSPLVTEDAKSGLRPFMKLMSCFHCFHSDCFGRWWRWLQKQNQLESANSVDTSVSILGENEDERVHADSNSSSHFNKDKEWVSVNCPVCRKEIHVKDVEHVQQFLMSDYNIEESGEGSMVDNSILLTDEEIKRREKFAEMFKVQKECGGIIEQKKLDVILPGMFLPGMANASVDVLDNVNQVVSIVEETNVGQGPVEATEAVDSDVPSSSTSALSVSREEMLGDHTTVEHLEPGVRELQFGRSKNNFRRNYNQQRSHERKQRSRQRTGSQPEKTVWVKKE*

Protein Length: 317

Fln nts: TTATTGCCAGGGAACTTGCAGCTTCTCCCATGCTCGTATCGTTGTGTGAGGCAGCGATTGATAGGCTTTCTGATATGAATCACCCAGAAGGAAATTGTTCATTTTGCTTGTCCCCTTTGGTCACGGAGGACGCCAAAAGTGGGTTGAGGCCTTTCATGAAGCTGATGTCCTGCTTTCATTGCTTTCACAGTGATTGCTTTGGAAGGTGGTGGAGGTGGCTTCAGAAACAAAATCAGCTTGAATCAGCAAACTCAGTAGATACATCTGTGTCAATATTAGGTGAAAATGAAGACGAGAGAGTTCATGCTGATTCCAATTCTAGTTCACATTTTAACAAAGATAAAGAGTGGGTTTCAGTAAACTGTCCTGTCTGCCGCAAGGAGATTCATGTAAAGGATGTTGAACATGTGCAGCAGTTTTTAATGTCTGATTACAACATTGAAGAGAGCGGTGAAGGAAGCATGGTCGACAACAGTATTCTATTAACAGACGAGGAGATCAAGAGAAGAGAAAAATTTGCAGAAATGTTCAAGGTCCAGAAAGAATGTGGTGGGATTATTGAACAGAAAAAGCTTGATGTGATTTTACCAGGGATGTTTCTGCCTGGTATGGCTAATGCATCTGTTGATGTACTGGATAATGTAAATCAAGTTGTTTCCATTGTCGAAGAAACAAACGTGGGGCAAGGTCCAGTGGAGGCAACAGAAGCTGTGGACTCAGATGTACCTAGCTCTAGTACAAGTGCTCTATCTGTTAGCAGGGAAGAGATGTTGGGGGATCATACTACAGTTGAACACTTGGAGCCTGGTGTCAGGGAGCTGCAATTTGGTAGGAGTAAAAATAACTTCAGAAGGAATTATAATCAGCAGCGTTCTCATGAAAGAAAGCAGCGCTCAAGGCAACGCACCGGCTCCCAACCAGAAAAGACTGTTTGGGTCAAGAAAGAATAG___GATGCTCCATATTGACTTCTCAAAAGTTGAATTACTTTTTACTGGTGAAGGAAAAACAGATGCTGCATTGGACATTTATCATGAGGTAGGCTGTCAAGTACCAGTTAATCTTGAATTTATTATTTGTTGAATTATATGATAGCAACTCATATGATGCTTTCATGAACTATTTTGTTTTCAGGATTTCTTATATTGTGTACAAATGTATTGTGAGAGGAGATTCTGTTTTGCTCATTACTGACAGACATTTGCAAGTTCTCTGTAA

Fln Alignment:

Contig3328___ARELAASPMLVSLCEAAIDRLSDMNHPEGNCSFCLSPLVTEDAKSGLRPFMKLMSCFHCFHSDCFGRWWRWLQKQNQLESANSVDTSVSIL-GENEDERVHADSNSSSHFNKDKEWVSVNCPVCRKEIHVKDVEHVQQFLMSDYNIEESGEGSMVDNSILLTDEEIKRREKFAEMFKVQKECGGIIEQKKLDVILPGMFLP
B9RCZ1______________ACELSSCLMLVALCEEAVEKLSIMNHPDGNCPLCLYPLVPEDEPDETLPFMKLMSCFHCFHSECIMRWWNWLQKEKDSNASSSSITTVHFVEGRVNQNAIHELMGESLG----------NCPVCRKVFHTKDFEHVLS-LVGVHCFELSSDRKEVNKELLQSDSESIRRQKFEALLKLQQENNGLIEPKKSLVVLPGMYLP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1014	33	66			0.997452
1116	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain