SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3316

Length: 1027 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3316

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAD-like 6 protein [Arabidopsis thaliana] gb\|ABD24442.1\| RAD-like protein 6 [Arabidopsis thaliana] gb\|AEE35694.1\| RAD-like 6 protein [Arabidopsis thaliana]	-	-	3.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	rad-like 6 protein	-	-	2.05869e-30	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.05869e-30	78%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.05869e-30	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.05869e-30	78%
Blast2go	nucleus	GO:0005634	Cellular Component	2.05869e-30	78%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
552		11		88	0.923564
555			11	88	0.923564
558	11		88		0.923564
559	88	11			0.923564
562			88	11	0.923564
563	88		11		0.923564
564			11	88	0.923564
565		11	88		0.923564
566	88			11	0.923564
568			88	11	0.923564
569	88	11			0.923564
572	87			12	0.992554
573	75	25			1.0
574	87			12	0.992554
575			75	12	0.975346
576		14	85		0.993533
578		14		85	0.993533
845		16		83	0.994512
866		40		60	1.0
943			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain