SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3315

Length: 1669 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3315

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AEE76015.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	45%
Blast2go	protein kinase family protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	69%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	69%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6GSP4

Fln msg: Distance to subject end: 825 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 556 - 1306

Fln protein: VVTLAGSQKQSKQEGGSGRNGSQGSGSTAGSSGVGGNRSAGTISKNEKKKGAIGKSENKKETDLVGQDRVKDSRVKKEIAGKDAAIKSKEAESVQSKHEIQKKDTSTKLKKVPAVDRAEEKSPSPGRCTKELFGNGADVDRSSNPASPIMASSLGLNRIKTRSGPLPQENYSFDHFRRFVPNLQDGLPAKGSNLGASKLSRTETCFTSTSTATSTVCSTLPIGGKSSKNLNSCHSSSCGSGSVSGNNDRESLGASSRKESKNGATQDNMSCGCWVDKDNNFNAMSTSCQSMGGSPAVQGSFRFQPSSHLQNETKASPWGSPGCSSSTDTHIQESEAPCGTSDGAKETESPRFQALLRVTRGPWKNKLTHDIKSFSHELDPRGVRPFPSWKTRNLNNIQVVLGAIRMRFDKAKEEVNSDLAIFAGDLVEILEKTAEAHPEWKESLEDLLVLARQCDMMSPGEFWLQCEGIVQDLDDRRQELPMGVLKQLHTRLLFILTRCTRLLQFHKEHGLDEDGNISRFHPQGTGASHVEKPTTNKNEKTPTTTGKEFKQSITPR

Protein Length: 557

Fln nts: CGTCGTGACCTTGGCTGGGAGTCAGAAACAGTCCAAACAGGAAGGAGGCAGTGGAAGGAATGGCAGTCAGGGTAGTGGTAGCACTGCTGGATCGAGTGGAGTAGGCGGGAACAGGAGCGCAGGTACTATTAGCAAAAATGAGAAGAAGAAAGGGGCAATTGGCAAAAGTGAAAATAAGAAGGAAACCGATCTTGTTGGCCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTATTAAATCGAAGGAGGCTGAGAGTGTTCAGTCGAAGCATGAGATTCAGAAAAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGACCGAGCTGAAGAAAAGAGTCCAAGCCCAGGGCGATGCACGAAAGAGCTCTTTGGCAATGGGGCTGATGTCGATCGGTCTTCGAACCCGGCCTCGCCCATCATGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTTTACCTCAAGAAAATTATAGTTTCGATCATTTTCGGAGGTTTGTACCTAATTTACAGGATGGTCTGCCAGCAAAAGGGTCAAATCTAGGTGCTAGTAAACTCTCCAGAACAGAGACTTGCTTCACTTCAACATCCACCGCAACATCGACTGTATGCTCAACATTACCTATTGGAGGCAAATCCTCAAAAAATTTGAATTCTTGTCATAGTAGCTCATGTGGCTCAGGTTCTGTATCGGGAAATAATGACAGGGAGTCTCTAGGGGCAAGCTCAAGGAAGGAATCCAAGAATGGAGCTACACAGGATAACATGTCATGCGGCTGTTGGGTTGACAAAGATAACAACTTCAATGCCATGTCCACTAGTTGTCAATCCATGGGTGGCAGCCCTGCTGTGCAAGGAAGCTTTCGGTTTCAACCTAGCAGCCATCTACAGAATGAAACAAAAGCTTCCCCATGGGGTTCGCCAGGATGCAGCAGCAGCACAGATACACACATTCAGGAATCTGAGGCTCCATGTGGCACTTCAGATGGTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCCATGACATTAAAAGTTTCTCTCATGAATTAGACCCTAGAGGAGTTCGACCTTTTCCATCTTGGAAGACACGCAATCTTAACAATATACAGGTAGTTTTGGGAGCTATACGAATGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGCGACTTGGTTGAAATACTTGAGAAGACCGCAGAAGCTCATCCTGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTGGCTCGGCAGTGTGATATGATGTCGCCTGGGGAATTTTGGTTGCAATGTGAGGGAATTGTGCAGGATTTAGATGATCGGCGTCAAGAGCTTCCTATGGGTGTGCTGAAACAACTTCATACACGCCTGCTTTTCATCCTTACACGGTGTACACGATTATTGCAGTTTCACAAAGAGCATGGGTTAGATGAGGATGGGAATATTTCGAGATTTCATCCACAGGGTACAGGGGCATCACATGTGGAGAAACCTACAACAAATAAAAATGAGAAGACTCCTACAACTACTGGGAAGGAATTTAAGCAGAGTATCACTCCTCGC

Fln Alignment:

Contig3315___SKNEKKKGAIGKSENKKETD----LVGQDRVKDS--RVKKEIAGKDAAIKSKEAESVQSKHEIQKKDTSTKLKKVPAVDRAEEKSPSPGRCTKELFGNGADVDRSSNPASPIMASSLGLNRIKT-RSGPLPQENYSFDHFRRFVPNLQDGLPAKGSNLGASKLXXXXXXXXXXXXXXXXXXXXLPIGGXXXXXXXXXXXXXXXXXXXXXXXDRESLGASSRKESKNGA---TQDNMSCGCWVDKDNNFNAMST-SCQSMGGSPAVQGSFRFQPSSHLQNETKA--SPWGSPGCSSSTDTHIQESEAP--CGTSDGAKETESPRFQALLRVTRGPWKNKLTHDIKSFSHELDPRGVRPFPSWKTRNLNNIQVVLGAIRMRFDKAKEEVNSDLAIFAGDLVEILEKTAEAHPEWKESLEDLLVLARQCDMMSPGEFWLQCEGIVQDLDDRRQELPMGVLKQLHTRLLFILTRCTRLLQFHKEHGLDEDGNI
F6GSP4______________SRSEKKKVKSPKDGNQIGTSGFATPCGKTQVKESGKQQKKDVKGKET----------QAPAPAKPNTSSSKLRAAPDVKEAAPSS-------------------SAAAVSPILASSLGLHRIKTTRSGPLPQE--SFFGFRG----------DKGSALGASNLSR-------------------PSGGVGGDGCLSSGSG--------------SKSSVKKKEGVNQSRIGSQEQVLLGNWADTGNNSDGMSSESAPSRDQSPHVQVRSRL-PNGESSSEVGRYNKQWGHSGGLRSSDVCTPEVQTSYDCETP---KESESPRFQAILRVTSGTRK-RLPADIKSFSHELNSKGVRPFPFWKPRGLNNLEEVLAVIRVKFDKAKEEVNSDLAIFAADLVGILEKNAESHPEWQETIEDLLVLARRCAVTSSGQFWLQCEGIVQELDDRRQELPMGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEHV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
752	33		66		1.0
799	90			10	0.90298
800		10	90		0.90298
802	90			10	0.90298
803			10	90	0.90298
805	90	10			0.90298
807	90			10	0.90298
810			10	90	0.90298
816		10	90		0.90298
817			90	10	0.90298
995			20	80	0.995493
996		80	20		0.995493
997	80		20		0.995493
1110		25	75		0.996473
1111	75			25	0.996473
1112	20	80			0.995493
1113	80			20	0.995493
1274		75		25	1.0
1312	87		12		0.992554
1403	10		90		0.90298
1494		85		14	0.993533
1495			85	14	0.993533
1601	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
969	980	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain