SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3300

Length: 1015 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3300

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RMK4_RICCO	-	-	52%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	56%
Blast2go	thimet oligopeptidase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	70%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M3A/M3B	IPR001567	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9RWY8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 396 aas, your sequence is shorter than subject: 249 - 675

Fln protein: MKTKKTQKQAVAFVLATALAFMAARVLLSLFRGRRKGCPEIKIRINLTTSEILNLADCIVAKSKKIHDSVAAVPLDKVAYSNVIKPLAELEAEQSYLVQSCLLPRMVATSKDVREASVEAEKIIDAHNVNCSMREDVYLVVKAFAARGEWLDSEAQRYVNRLVREFERQGVHLTSGKREEFERVKTRIGELCNKFVNNLNEEGRYLLFKESDLAGLPSDFIKSLDKTEDGKLLVNDKPTHTYPILNKR*

Protein Length: 250

Fln nts: GGATCAAGAAAACTATCCGAGGCCTTAATACAATCGAGCGACAGTTTATTTaGctGgaAcCTtgaTTTTTTcTTtTTTCTTCTCTGTGAGAATTTGCTCAACGATTACCCGAAAAAAATTGGAGgTGCAGTCCAAG_-_ATGAAGACCAAGAAGACGCAGAAGCAGGCAGTGGCATTTGTACTAGCAACTGCTTTAGCGTTCATGGCTGCCAGGGTCCTTCTTTCATTGTTCAGAGGCCGGCGTAAAGGATGTCCTGAAATCAAAATCCGCATTAATCTTACCACATCAGAAATACTGAATCTGGCTGATTGTATTGTTGCCAAATCAAAGAAGATACATGATTCTGTGGCAGCGGTGCCTCTTGACAAGGTTGCTTATTCAAATGTTATCAAGCCTCTAGCTGAATTAGAAGCTGAACAATCTTATTTAGTGCAGTCTTGCTTGCTTCCAAGAATGGTGGCCACATCAAAGGATGTCCGGGAAGCCAGTGTTGAAGCAGAAAAAATAATTGATGCTCACAATGTGAATTGCAGCATGCGAGAAGATGTTTATCTTGTTGTCAAGGCATTTGCAGCAAGAGGTGAATGGCTAGATTCAGAAGCTCAACGCTATGTCAACCGCTTGGTTAGGGAATTTGAGAGGCAAGGAGTTCACCTCACTTCTGGAAAAAGAGAAGAATTTGAGAGGGTTAAAACAAGAATAGGAGAGCTATGTAACAAATTCGTGAACAATTTAAATGAGGAAGGCCGTTATCTTCTTTTTAAAGAGTCAGACCTGGCTGGATTGCCATCTGATTTCATCAAGAGTTTGGACAAAACAGAGGATGGGAAGCTACTGGTGAATGATAAGCCAACCCATACTTATCCTATACTAAACAAAAGATAGTTTTATGCCTTTTTGATCAGATTATTCATACCAATGAAGTGGTGGATACAAAGGCACTTTTCGGGATCTTTATCCAAAGGaAAATGTACATATTTCCGGTTGTTGGAGGGCACAAACCCTGCTGCGTCACTT

Fln Alignment:

Contig3300___RRKGCPEIKIRINLTTSEILNLADCIVAKSKKIHDSVAAVPLDKVAYSNVIKPLAELEAEQSYLVQSCLLPRMVATSKDVREASVEAEKIIDAHNVNCSMREDVYLVVKAFAARGEWLDSEAQRYVNRLVREFERQGVHLTSGKREEFERVKTRIGELCNKFVNNLNEEGRYLLFKESDLAGLPSDFIKSLDKTEDGKLLVNDKPTHTYPILNK
A9RWY8______________RRSHADGINVRLGLSASEILSLADFIISTSTSVHDAVAAVPLDQVSYDNVIAPLANLQAEEFALVQSCVFPALVSTSKEVRDASSEAEKRLDAYNVKCSMREDVYRVVKAFSEKKVTLEPEAQRFVDRVVRDYERLGLNLSPEIRKEVERLKTTIGELCIEFQKNMNEENRRLYFTDSELAGLPADFIKELNRDSEDKLEVTLKYPHYFPIMEK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
296	85		14		0.993533
475		69		30	1.0
498	63		9		1.0
684			88	11	0.923564
687			11	88	0.923564
717	88			11	0.923564
846	85			14	0.993533
850	85			14	0.993533
884			25	75	0.996473
921	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain