SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3298

Length: 1253 nt

Origin of reads: Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3298 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Separated hits, possible frame ERROR between 354 and 413, Distance to subject end: 71 aas, your sequence is shorter than subject: 389 - 495

Fln protein: MFFTRYSRDTAIKIWEGSGWKGRLGLQNLQNRCLVTVGNENDLQMHDQIRDMGREVAESLLPHRIWRWPEQVIENLLLQSKLVVRGIKxxxxxxxxxxxxxxxxxxxxxLKLLDTEGCILERIMKWVKFPDLIWLRYRECPHASLPRCIPMKKLRVLQVSGRSLKTLWDEEAEPPEELRELEIYGPLRNIPKSLGRLKNLERIVVGRFPNIGRVNLIELPEEFCELKSLKALVLKECSRLKSLPHSFGKLTTLKHIDFSFCRNLERLPDSFGSLKNLEHIDLSNCYDLKSLPDSFGCLGNLRSIDLQGCHKLKRLPDSFGKLKKLKRISISDCHGLRDLPESLGDLSKLEYIDFSRCHNLKSLPDSFGNLINLQRLNLSNCHDLETLPD

Protein Length: 390

Fln nts: AACACTTCCATCAGAGATTAAAAACAGACTTAGGATTAGCTACGATGCATTGGAGGAAGAGGACAAAAAAATCTTCTTAGATATTGC_-_ATGTTTTTTACAAGATATAGTAGGGATACTGCCATAAAAATATGGGAGGGATCAGGCTGGAAAGGTCGGCTGGGCCTTCAAAATCTACAGAATAGATGCCTTGTAACAGTGGGCAATGAAAACGACCTCCAGATGCATGACCAGATTAGGGACATGGGAAGAGAAGTTGCTGAATCTTTGTTGCCCCATCGCATTTGGCGTTGGCCAGAACAGGTCATCGAAAATTTGCTGCTGCAATCAAAACTTGTCGTGCGCGGAATCAAGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGAAACTTCTTGATACAGAAGGATGTATCTTGGAACGCATTATGAAATGGGTGAAGTTCCCAGATCTGATATGGCTACGCTATAGGGAGTGTCCCCACGCTTCCCTGCCTCGCTGCATTCCAATGAAGAAATTAAGGGTTCTACAAGTGTCCGGTAGGTCATTGAAGACATTGTGGGACGAAGAAGCCGAGCCACCAGAGGAATTGCGGGAGTTAGAGATTTATGGTCCGCTCAGGAACATTCCAAAGTCCTTAGGGCGGCTAAAGAACCTCGAACGGATTGTCGTCGGCAGGTTTCCAAATATAGGACGGGTTAATCTCATAGAATTGCCAGAAGAATTTTGTGAGCTGAAATCTTTAAAGGCCTTGGTGTTAAAAGAGTGCTCAAGGTTGAAGTCACTGCCACATTCTTTTGGTAAGTTAACAACCCTCAAACACATTGATTTCTCCTTCTGCCGCAATTTGGAGAGGCTACCAGATTCTTTTGGTAGTTTAAAGAACCTGGAACACATTGATCTCTCAAATTGCTACGATCTGAAGAGCCTCCCAGATTCCTTTGGTTGTTTAGGGAATCTCCGAAGCATCGATTTGCAGGGGTGCCACAAGTTAAAGAGGCTGCCTGATTCCTTTGGTAAACTAAAGAAGCTCAAACGCATCAGTATATCAGATTGCCACGGTTTGAGGGATCTGCCAGAATCCTTAGGGGATTTAAGCAAGCTCGAATACATCGATTTTTCAAGGTGCCATAATTTGAAGAGCCTACCTGACTCATTTGGTAATTTGATCAATCTCCAACGCCTCAATCTCTCAAATTGCCACGATTTAGAGACGCTGCCAGATT

Fln Alignment:

Contig3298___QKNLLRYCMFFTRYSRDTAIKIWEGSGWKGRLGLQNLQNRCLVTVGNENDLQMHDQIRDMGREVAESLLPHRIWRWP--EQVIENLLLQSKLVVRGIKMxxxxxxxxxxxxxxxxxxxxLKLLDT-EGCILERIMKWVKFPDLIWLRYRECPHASLPRCIPMKKLRVLQVSGRSLKTLWDXXXXXXXXXXXXE----IYGPLRNIPKSLGRLKNLERIVVGRFPNIGRVNLIELPEEFCELKSLKALVLKECSRLKSLPHSFGKLTTLKHIDFSFCRNLERLPDSFGSLKNLEHIDLSNCYDLKSLPDSFGCLGNLRSIDLQGCHKLKRLPDSFGKL----------KKLKRISISDCHGLRDLPESLGDLSKLEYIDFSRCHNLKSLPDSFGNLINLQRLNLSNCHDLETLPD
A9NW11______________QQMFLDTACFFIGQKRDTAIRIWEGSGWNGRLGLQTLENRCLLEVDIENNIDMHDHLRDFGKAVADASLPRRLLYSTAIKDMLEQLSNEQVSTVRGIRVxxxxxxxxxxxxxxxxxxxxLELVDTDENAILACILR-KPVPSLIWLRWNKCPNLSLPWWIPMGRLRVLQVYGSELKTLWEDESQVPWQVPLQLRELEINAPLSNIPKSIGWLEHLERIVVAGFLS-GHVHLTKLPKEFCRLRSLRDLVLTECSKMKSLPDSFCHLWNLQHIDLSFCCNLERLPDSIGRLQGLRHINLSYCHDLERLPDSIGRLRGLQHIDLRGCHNLESLPDSFGELWDLPYSFGEPWDLRHINLSGCHDLQRLPDSFVNLRYLQHIDLQGCHNLQSLPDGFGDLRNLDHVNLSNCHDLEWLPD

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1012	20	80		0.995493
1056	25	75		0.996473
1099	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain