SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3292

Length: 1211 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3292

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE	-	-	56%
FL-Next	sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	rna-dependent rna polymerase	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LQV2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 293 - 1107

Fln protein: TGPTNGLCCSSNSLVRS*CYN*GDPRIFANYMLNDTLGIIANRHTVFADNEPAMARSETCLELASLFSLAVDFPKTGIPAQIPSTLIPKEYPDFMEKEDKPKYESQRVIGKLYRAVKKVATDTLSINSFTRDVAEKAYDKDLEVPGFWNYIDEALECKNWYDSELATLMYHYGIKYEAEIVSGNIFSLSKFHGSKLGDLKETIMLEVKALRKEARSWLADGESRLSDQYGKASAWYHVTYHPDYWGYGDYEGKDENNPHFISFAWIVYDKLLRIKRQSIAQKLAGNLLSLRI*

Protein Length: 294

Fln nts: AACAGGACCCACCAATGGACTATGTTGCTCCTCCAACAGCCTCGTTAGATCATAATGTTACAATTGAGGAGATCCAAGAATATTTGCAAATTATATGCTAAATGACACCTTGGGAATTATAGCCAATAGACATACCGTGTTTGCCGATAATGAGCCAGCCATGGCTCGGAGTGAGACTTGCCTCGAGTTAGCAAGCCTCTTTTCTTTAGCAGTAGATTTCCCCAAGACTGGCATTCCAGCACAGATTCCATCTACTCTAATTCCAAAGGAATATCCCGATTTCATGGAGAAAGAGGATAAACCCAAGTATGAATCACAGAGAGTAATTGGTAAACTTTACAGGGCTGTGAAGAAAGTTGCAACGGATACTCTCTCTATAAATTCATTCACAAGGGATGTTGCAGAGAAGGCATACGATAAGGATTTGGAGGTGCCTGGATTTTGGAACTACATTGATGAAGCACTAGAATGCAAAAACTGGTATGACTCAGAATTGGCTACATTAATGTACCATTATGGTATCAAATATGAAGCAGAAATTGTAAGTGGAAACATTTTCAGTTTGTCGAAATTTCATGGTTCTAAGCTTGGAGATCTCAAGGAAACAATCATGTTAGAAGTCAAGGCTCTCAGAAAGGAAGCCAGGTCATGGCTTGCGGATGGTGAAAGCAGATTGTCAGATCAATATGGAAAAGCATCTGCTTGGTATCATGTAACATATCACCCAGATTATTGGGGTTATGGAGATTATGAAGGGAAAGATGAGAACAACCCTCATTTTATAAGCTTTGCATGGATTGTGTATGACAAGCTACTTCGGATCAAACGTCAGAGTATTGCACAAAAGCTTGCGGGCAATCTTCTAAGCTTGCGTATTTAG___GGAGTACATTGATTGTATCACTTCCGCGGTTTTCTTGTGGGTTGAATGCTTTCTATCTTTAGTTTCGATTTTCCCAGTAGTGCAATTATAAAGAGACACAAGAAAGAAGAATACGTAGCTTTAACTGGCTACTCTTTTCGTTGATCAGATTTAAGTTGAATTCATATGGGCATAGCGTTTACATTATATATATTTGCATGGGCCCTCTATTTTTCGGGAGGTGTAACAGCAGAAGCATGTAGATAGTGTAGATATTCATCCTGATACTGTTATAAAATATATTTCTTGCTATAGTTGGCATATAATTGGTTCTATGCACGTTACAACGTCG

Fln Alignment:

Contig3292___FANYMLNDTLGIIANRHTVFADNEPAMARSETCLELASLFSLAVDFPKTGIPAQIPSTLIPKEYPDFMEKEDKPKYESQRVIGKLYRAVKKVATDTLSINSFTRDVAEKAYDKDLEVPGFWNYIDEALECKNWYDSELATLMYHYGIKYEAEIVSGNIFSLSKFHGSKLGDLKETIMLEVKALRKEARSWLADGESRLSDQYGKASAWYHVTYHPDYWGYGDYEGKDENNPHFISFAWIVYDKLLRIKRQSIAQK
Q9LQV2______________FANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETLS-LFNASEEEENESAKASAWYHVTYHSSYWGLYN-EGL--NRDHFLSFAWCVYDKLVRIKKTNLGRR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
690	75	25		0.996473
691		25	75	0.996473
948	14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain