SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3282

Length: 2970 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3282
CGTCGTGACCTTGGCTGTCACTCAAAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGAGGAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAACAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCAAGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACATGGAGAAACCTTATGGAGAAAAGGGCCAGGCATATATACAATGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGATAATGTGCAAGCAAAAAGAAGCTCCAGACCCAATTATCAATACATGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGTTTATGGCATTTGGATCGAGCATCCCTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACACCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGACGTGAATACCACTTCACTTGGGAAACGCCTTGAGGCAACAGTATATTCTAAAAAGAATAACGGTGTATGTGCTGCCTTTCTCAGCAACAACCACAGGAAGCAGGAAGCAACCGTGCAATACAATGGAAACTCTTATAATCTACCTGCTTGGTCTGTCAGTGTCTTGCCAGACTGCAAAAATGTGATCTATAACACTGCAAAGGTTAATATACAGACTTCCCTAATGGGAATGGAGCAGGTCAGCATGGAGTCCCTTCATCCTGTTGCAACATCGAGTGGAGATACAGGAAGAGTATCTGTATACTGGTCATGGCACAAAGAAGATGTTGGAATATGGGGACAAGATAAATTCTCTGCCCAGGGCTTGTTAGAACAGCTAAGCACAGTTTTAGATAAAAGTGATTATCTATGGTACACAATCAGTGTCAATATTCCTGAAGATGAACCCTTTTTGAAGAGTGGAAGCCAGCCAATCTTGCATGTGGATAGTCGAGGACATACACTTCATGTGTTTGTGAATGGGAATTTCGCAGGAACTCAGAGTGGAGATTATTCGAAATGGGGATTTACGTTTGAGAAGCCAATTACACTGCAAGCTGGAGAGAATCAGATAGCTCTGTTAAGCATGACAGTTGGATTGCAGAACATCGGTCCTTTCTTTGACACATGGACGACAGGAATAGGTGGTCCTGTGAAATTGCTGGGGCTTAGAGATGGTCCAATGGATTTGAGCTTCTGGACGTGGTATTACCAGATAGGTCTGAAGGGAGAACACTTACAACTATATTCAGACACAGGAGCAAATCAAGTCAAATGGCTTTCCGGGATAAACCCTCCCAAACAAGCTGCTCTCATGTGGTACAAGACTGAGTTTAACGCACCTGAAGGAACCAATGCAGTGGCTCTGGACCTAAGCACCATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGCTATTTTGTGTCACTGAAGGCTCCCACTGATGGCTGCTCCAATGTATGCGATTACAGAGGGACTTATTACTCATCTAAATGTGTCACTAACTGCGGACAACCCACTCAAAAATGGTACCATGTTCCTCGCTCATGGCTGCAGCCAACAAAGAATGTACTAGTTTTGCTTGAGGAAGTTGGCGGTGATCCTTCTGGAATTTCATTCTGAACAAGATATGTTGATACTGTCTGCGCCCATGTGTCTCAAGCTCATCCCACCTTCAACTCATTGACTTTGCCAGAGCTTCGGCTCCAATGCTCTTCAGGGCAACACATATCATCCTTAAGCTTTGCAAGCTTCGGAAATCCAAGTGGGTCTTGTGGAAATTTCATCAAGGGCTCTTGCCATGCAGTGAATTCAACTTCCATTGTAGAGAAGGTGCATGTTTAAACTTCTTTACTTCTAAGGTAATCTTCCAATACATGGTTTTGAATGAGTAAGATAAGGTCTGCTCACATAATTATTTTTTATGCAGGCATGCCTCGGGAAGGAGACATGTTCCATCTCTGTTTCTGAGGACTCGTTTGGAAGCGCCTGTGCCGATAATCTCAAGTCTTTGGCAGTTGGGGCAGTTTGCAAATATTGAACTGGGGCCGCTGCTAGGAAAATTGTCAAATAAATATGTAAAATAGAACACTAATCCTCTCCATGAAATAATCTTATGTGTACGCCTGCAAAAAATGATCTTGCAAAACTGATCAATTACAAGGTTGGACACATAAGAGTGTCTGCACAAATCTTAACAGTAACATAGAAGCAAAGCCCAAAACCCAACGGGAAACCTAATGTGGATGGAAAAATTCCCAAAGTTTCACATTCCATTCTACCTCAAATCTTTCTTTGTTCAAAACGATTCTGAACACCGTTGAGGGTGGTTATGTGCATCATGACCTTTGTATTTAATCAACTTAGCTTTCATAATTTAAATGTCTCATTTGATTTTGATAAGCCTTTGCAGGCATGAAA

Ace file of the UniGene sp_v2.0_unigene3282

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	77%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	beta-galactosidase 8-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	86%
Blast2go	Other glycan degradation	00511	86%
Blast2go	Glycosaminoglycan degradation	00531	86%
Blast2go	Sphingolipid metabolism	00600	86%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	86%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	86%
Blast2go	sugar binding	GO:0005529	Molecular Function	86%
Blast2go	cation binding	GO:0043169	Molecular Function	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Overlapping hits, possible frame ERROR between 1010 and 1006, Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 31 aas, putative chimeric sequence, your sequence is shorter than subject: 798 - 861

Fln protein: S*PWLSLKSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFEERFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIKFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNMEKPYGEKGQAYIQWAAKMALSLNTGLPWIMCKQKEAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWFMAFGSSIPHRPTEDVAFAVARFYQRGGTFQNYYMYHGGTNFGRTPGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRRxxxTSLGKRLEATVYSKKNNGVCAAFLSNNHRKQEATVQYNGNSYNLPAWSVSVLPDCKNVIYNTAKVNIQTSLMGMEQVSMESLHPVATSSGDTGRVSVYWSWHKEDVGIWGQDKFSAQGLLEQLSTVLDKSDYLWYTISVNIPEDEPFLKSGSQPILHVDSRGHTLHVFVNGNFAGTQSGDYSKWGFTFEKPITLQAGENQIALLSMTVGLQNIGPFFDTWTTGIGGPVKLLGLRDGPMDLSFWTWYYQIGLKGEHLQLYSDTGANQVKWLSGINPPKQAALMWYKTEFNAPEGTNAVALDLSTMSKGQAWVNGNHIGRYFVSLKAPTDGCSNVCDYRGTYYSSKCVTNCGQPTQKWYHVPRSWLQPTKNVLVLLEEVGGDPSGISFRTRYVDTVCAHVSQAHPTFNSLTLPELRLQCSSGQHISSLSFASFGNPSGSCGNFIKGSCHAVNSTSIVEKVHV*

Protein Length: 799

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGAGGAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAACAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCAAGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACATGGAGAAACCTTATGGAGAAAAGGGCCAGGCATATATACAATGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGATAATGTGCAAGCAAAAAGAAGCTCCAGACCCAATTATCAATACATGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGTTTATGGCATTTGGATCGAGCATCCCTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACACCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGACGTxxxxxxxxxACTTCACTTGGGAAACGCCTTGAGGCAACAGTATATTCTAAAAAGAATAACGGTGTATGTGCTGCCTTTCTCAGCAACAACCACAGGAAGCAGGAAGCAACCGTGCAATACAATGGAAACTCTTATAATCTACCTGCTTGGTCTGTCAGTGTCTTGCCAGACTGCAAAAATGTGATCTATAACACTGCAAAGGTTAATATACAGACTTCCCTAATGGGAATGGAGCAGGTCAGCATGGAGTCCCTTCATCCTGTTGCAACATCGAGTGGAGATACAGGAAGAGTATCTGTATACTGGTCATGGCACAAAGAAGATGTTGGAATATGGGGACAAGATAAATTCTCTGCCCAGGGCTTGTTAGAACAGCTAAGCACAGTTTTAGATAAAAGTGATTATCTATGGTACACAATCAGTGTCAATATTCCTGAAGATGAACCCTTTTTGAAGAGTGGAAGCCAGCCAATCTTGCATGTGGATAGTCGAGGACATACACTTCATGTGTTTGTGAATGGGAATTTCGCAGGAACTCAGAGTGGAGATTATTCGAAATGGGGATTTACGTTTGAGAAGCCAATTACACTGCAAGCTGGAGAGAATCAGATAGCTCTGTTAAGCATGACAGTTGGATTGCAGAACATCGGTCCTTTCTTTGACACATGGACGACAGGAATAGGTGGTCCTGTGAAATTGCTGGGGCTTAGAGATGGTCCAATGGATTTGAGCTTCTGGACGTGGTATTACCAGATAGGTCTGAAGGGAGAACACTTACAACTATATTCAGACACAGGAGCAAATCAAGTCAAATGGCTTTCCGGGATAAACCCTCCCAAACAAGCTGCTCTCATGTGGTACAAGACTGAGTTTAACGCACCTGAAGGAACCAATGCAGTGGCTCTGGACCTAAGCACCATGAGCAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGCTATTTTGTGTCACTGAAGGCTCCCACTGATGGCTGCTCCAATGTATGCGATTACAGAGGGACTTATTACTCATCTAAATGTGTCACTAACTGCGGACAACCCACTCAAAAATGGTACCATGTTCCTCGCTCATGGCTGCAGCCAACAAAGAATGTACTAGTTTTGCTTGAGGAAGTTGGCGGTGATCCTTCTGGAATTTCATTCaGAACAAGATATGTTGATACTGTCTGCGCCCATGTGTCTCAAGCTCATCCCACCTTCAACTCATTGACTTTGCCAGAGCTTCGGCTCCAATGCTCTTCAGGGCAACACATATCATCCTTAAGCTTTGCAAGCTTCGGAAATCCAAGTGGGTCTTGTGGAAATTTCATCAAGGGCTCTTGCCATGCAGTGAATTCAACTTCCATTGTAGAGAAGGTGCATGTTTAAACTTCTTTACTTCTAAGGTAATCTTCCAATACATGGTTTTGAATGAGTAAGATAAGGTCTGCTCACATAATTATTTTTTATGCAGGCATGCCTCGGGAAGGAGACATGTTCCATCTCTGTTTCTGAGGACTCGTTTGGAAGCGCcTGTGCCGATAATCTCAAGTCTTTGGCAGTTGGGGCAGTTTGCAAATATTGAACTGGGGCCGCTGCTAGGAAAATTGTCAAATAAATATGTAAAATAGAACACTAATCCTCTCCATGAAATAATCTTATGTGTACGCCTGCAAAAAATGATCTTGCAAAACTGATCAATTACAAGGTTGGACACATAAGAGTGTCTGCACAAATCTTAACAGTAACATAGAAGCAAAGCCCAAAACCCAACGGGAAACCTAATGTGGATGGAAAAATTCCCAAAGTTTCACATTCCATTCTACCTCAAATCTTTCTTTGTTCAAAACGATTCTGAACACCGTTGAGGGTGGTTATGTGCATCATGACCTTTGTATTTAATCAACTTAGCTTTCATAATTTAAATGTCTCATTTGATTTTGATAAGCCTTTGCAGGCATGAAA

Fln Alignment:

Contig3282___LSLKSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFEERFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIKFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNMEKPYGEKGQAYIQWAAKMALSLNTGLPWIMCKQKEAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWFMAFGSSIPHRPTEDVAFAVARFYQRGGTFQNYYMYHGGTNFGRTPGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRRxxTSLGKRLEATVYSKKNNGVCAAFLSNNHRKQEATVQYNGNSYNLPAWSVSVLPDCKNVIYNTAKVNIQTSLMGMEQVSMESLHPVATSSGDTGRVSVYWSWHKEDVGIWGQDKFSAQGLLEQLSTVLDKSDYLWYTISVNIPEDEPFLKSGSQPILHVDSRGHTLHVFVNGNFAGTQSGDYSKWGFTFEKPITLQAGENQIALLSMTVGLQNIGPFFDTWTTGIGGPVKLLGLRDGPMDLSFWTWYYQIGLKGEHLQLYSDTGANQVKWLSGINPPKQAALMWYKTEFNAPEGTNAVALDLSTMSKGQAWVNGNHIGRYFVSLKAPTDGCSNVCDYRGTYYSSKCVTNCGQPTQKWYHVPRSWLQPTKNVLVLLEEVGGDPSGISFRTRYVDTVCAHVSQAH-PTFNS----------LTLP--ELRLQCSSGQH-ISSLSFASFGNPSGSCGNFIKGSCHAVNSTSIVEK
A9NUR2______________VSAANVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAASMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESxxTSLGSGLEAHVYSP-GSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANL-ILAGSNSMKGTDSANAASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKSSATSGLEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1700			25	75	0.996473
2386	33		33		0.997753
2527			33	66	0.99834
2542	66		33		0.99834
2548		50		50	1.0
2587	75		25		0.997678
2688	80			20	0.995493
2689	20			80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain