SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3274

Length: 938 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3274 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vps52 / Sac2-like protein [Arabidopsis thaliana] gb\|AAK56274.1\|AF367286_1 At1g71270/F3I17_8 [Arabidopsis thaliana] gb\|AAO42771.1\| At1g71270/F3I17_8 [Arabidopsis thaliana] gb\|AEE35182.1\| Vps52 / Sac2-like protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	vacuolar protein sorting-associated protein 52 homolog	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	sexual reproduction	GO:0019953	Biological Process	86%
Blast2go	pollen tube growth	GO:0009860	Biological Process	86%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vps52/Sac2	IPR007258	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T9L2

Fln msg: Distance to subject end: 377 aas, your sequence is shorter than subject: 312 - 707

Fln protein: VVTLAVTQTVSAGDLTFGDNVDGEDICLEGLQQELEDCQGDEVVANILAKGTELREYTKGVEENLRKVELESIQDYINESDNLVSLHSEIRECDSILTQMESLLGGFQVEIGSISSEIKTLQEKSMGMGLKLKNRRVAELNLARFIEDLVVPPKMIDTIVDGEVNEEYVRTLQMLSKKLKFIEVDPMAKTSAALKDVQPEFERLRQKAISKGFDFIVQKLQALKKPKTNIQILQQNVLLKYKYVAAFLKEHGKDVYHDIYLAYIDTLNKVLSAHFRAYIQALEKLQLDIASANDLIGIDTRSTSLFSRAREP

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTGTCTCAGCCGGAGATCTCACTTTTGGGGATAATGTTGACGGTGAGGATATATGCTTGGAAGGTCTGCAACAAGAATTGGAGGACTGCCAAGGCGATGAGGTTGTTGCAAACATACTGGCAAAAGGCACTGAGCTACGAGAATACACCAAGGGTGTTGAAGAGAATTTACGAAAAGTGGAGTTGGAATCCATTCAGGATTACATAAATGAAAGTGACAACCTGGTTTCCCTTCATTCTGAGATTCGTGAATGTGATTCCATTCTTACACAGATGGAGTCCCTCCTTGGAGGATTTCAGGTTGAGATAGGATCAATTAGCTCAGAAATCAAGACACTTCAGGAGAAATCCATGGGCATGGGCTTGAAGCTGAAAAATCGGAGGGTAGCTGAGCTGAATCTGGCAAGATTTATAGAAGATCTTGTGGTTCCACCAAAGATGATCGACACAATTGTGGATGGAGAGGTAAATGAAGAATATGTGAGAACGTTGCAAATGCTAAGCAAGAAGTTGAAGTTTATCGAAGTGGATCCAATGGCAAAAACATCTGCAGCATTGAAGGATGTTCAACCCGAATTTGAGAGGCTTCGTCAAAAAGCTATTTCAAAGGGTTTTGATTTTATAGTCCAAAAGCTTCAAGCTTTGAAGAAGCCAAAAACAAACATCCAGATCTTGCAACAAAATGTTCTTCTTAAATACAAATATGTTGCTGCATTTCTTAAGGAGCATGGAAAAGATGTCTACCATGATATATATTTAGCCTATATAGATACATTGAACAAGGTACTTAGTGCACATTTTCGTGCATATATACAAGCATTAGAGAAGTTGCAGTTGGACATAGCATCTGCAAATGATTTGATTGGAATTGACACAAGAAGCACAAGTTTATTTTCTAGAGCAAGGGAGCCAT

Fln Alignment:

Contig3274___VSAGDLTFGDNVDGEDICLEGLQQELEDCQGDEVVANILAKGTELREYTKGVEENLRKVELESIQDYINESDNLVSLHSEIRECDSILTQMESLLGGFQVEIGSISSEIKTLQEKSMGMGLKLKNRRVAELNLARFIEDLVVPPKMIDTIVDGEVNEEYVRTLQMLSKKLKFIEVDPMAKTSAALKDVQPEFERLRQKAISKGFDFIVQKLQALKKPKTNIQILQQNVLLKYKYVAAFLKEHGKDVYHDIYLAYIDTLNKVLSAHFRAYIQALEKLQLDIASANDLIGIDTRSTSLFSRAREP
D7T9L2______________VFVGDLNFEEDVSSDDISLEGLQKELEECRNDDVVANILSKGTKLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDSILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIVPPRMVDIIVDGEVNEEYMRTLEILSKKLKFVEVEPMVKTSKALKDVQPELEKLRQKAVSKVFEFIVQKLYALRKPKTNIQILQQSVLLKYKYVVSFLKEHGKEVYIEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVDTRSTSLFSRGREP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
625	33		33	33	0.997753
873		83		16	0.994512
875			16	83	0.994512
876		83		16	0.994512
877	83		16		0.994512
881		16		83	0.994512
882		16		83	0.994512
884	16			83	0.994512
885		83	16		0.994512
886		83	16		0.994512
887	16	66		16	0.988813
890	66		16	16	0.988813
891	83			16	0.994512
892	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain