SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3267

Length: 1645 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3267 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative multiple stress-responsive zinc-finger protein [Citrus hybrid cultivar]	-	-	2.99878e-43	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	69%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, AN1-type	IPR000058	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, A20-type	IPR002653	-	-
Sma3	Domain of unknown function DUF632	IPR006867	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAI0

Fln msg:

Fln protein: MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDMVLKQAKAKASSSTSSVEHSNDNIAKLAEVSEPAFQLTNQAELEGLPGSSNGESGQAEGQERAKQVPTRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPFDYRAAGRAAIEKANPVVKAEKVDKF*

Protein Length: 177

Fln nts: GACCTAAAAATTCCAAGAAGGTTAACCTTGATCAAGTTTCCTTTATTCAATCGTCTGTTGGGAGAGTTGAATCCGTCTTCCCCTATAATTCATTCGATTGAGAGGGAGTCCCTTTAATTCTATGCGTTCGATCGACCTTGTGGCCAGAAATTCGGATTTTTTTGGGAGAAAGGGTTGGATCCCGCGGCTTATTTACGGCTGGATTTGTTTAGATCCGTGAGGGTTTTCTGAAAGGAGGAGATTTTATTCATTCGGCGTGGATGCGTCTAGGATGGACCTGGTAGCTTTTCTAATATCCTTCCGACTGTACCAAAATTGGAGCGGAACAGCCGTCTTTAGCAGTTTTTAGGCATAAAACAGCTGAATCGGATCAGAACACGCCAGCAACCTGTAGAACCGTTGCGGAACTTGAGATTTTGAGGCTTAGTTCAAGGGAATCCGGATCCTATTGAAGGTCAGGTCTAAACGGCAGGTGGAATTAAGGTGCTAAACTGAAGAAAGGCAGAATTAACAGACGAAACTGCCATCTCTTAAAGGCATCTCTGATAAGTTCTATTTCAGAACCCTGTTGTGTTTCCCTGAGTCTTTAAATGCCGAAGCGGATTAACACCGTGGAATTGAAGTTTTAACGCTTGAATGCGATCGCTACAGATCCAGTAATTTGATTATTTTTTTAACAAATACATCTTCCTATTCTCAGTTTTCATTAAATTATTTAGAGATA_-_ATGGCTCAAGAAAGCAAGAAAAGAGATCACGATGAGACTGGTTGCCAACCTCCCGAAGGGCCTCTTCTGTGTGCGAACAATTGTGGATTTTTCGGAAGTGCGGCTACAATGAATTTTTGCTCCAAATGCTACAGAGATATGGTATTGAAGCAGGCCAAGGCCAAGGCTTCGTCCTCGACTTCATCAGTCGAACATAGCAATGACAATATTGCGAAGCTGGCTGAGGTTTCTGAACCCGCCTTCCAGTTAACTAATCAGGCAGAATTGGAGGGTTTGCCGGGCTCTTCCAATGGAGAATCAGGCCAGGCAGAAGGACAAGAGAGAGCAAAGCAGGTCCCGACCCGTTGCAATTGTTGCAAGAAACGTGTTGGATTGACAGGCTTCAATTGCCGTTGTGGGAACACCTTTTGTTCTTTGCACCGCTATTCGGACAAGCATAATTGCCCCTTTGATTACAGGGCAGCGGGCCGAGCGGCCATTGAGAAAGCAAATCCTGTTGTGAAGGCGGAAAAGGTAGATAAGTTTTAG___TTTGTTTCATATGTCAGCCAATCTATGAAGGTAAGCTAAACCTTCAGAAACAGATTAACAGCCTTTTCTGCTATGGTGTGTGATGATGATTAAAGAGTGGACATCTTTAAGATTTCATTTTATAGTTTGCTTTCTTGGAGCCATAAGTTTTTTGTTTGGTGTCTGTGGATTGGATATCTTTCTAAGGATGGCTATCTACACATACTTGTCTTGTGAGTAATCTTGTACAGTAATATTTTAGAGGGTCTAGGCTATATTTTCCTGATTTACTCTGAAGTCTAACAGCTACATGTTTTCGAGTTAGCAGGATTATATCCTATTAATCTATTTAACTTGTCTATGTCCATGGAAGAATCAAGTATCATCAGTAGTTAACAACATCAACCTATCATC

Fln Alignment:

Contig3267___MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDMVLXXXXXXXXXXXXSVEHSNDNIAKLAEVSEPAFQLTNQAELEGLPGSSNGESGQAEGQERAKQVPTRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPFDYRAAGRAAIEKANPVVKAEKVDKF
D5AAI0______________MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDTVLKQAKASSSTSS--VEHSNDNIAKPTEVSEPAFQLTNQAESEGLPGSSNGESGQAEGQERAKQVPIRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPYDYRAEGRAAIEKANPVVKAEKVDKF

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
1438	90		9		0.999872
1496	90		10		0.90298
1498			10	90	0.90298
1499	10			90	0.90298
1501	10	30		60	1.0
1565	10		90		0.90298
1573			88	11	0.923564
1576			11	88	0.923564
1578		88	11		0.923564
1580	88	11			0.923564
1581	11	88			0.923564
1582			11	88	0.923564
1584		11		88	0.923564
1585	11	88			0.923564
1586	11	88			0.923564
1587		88	11		0.923564
1588	88		11		0.923564
1589	88			11	0.923564
1593	11		88		0.923564
1598	12	12		62	0.962769
1602	85		14		0.993533
1604	80		20		0.995493
1609		20	80		0.995493
1610	80	20			0.995493
1613		80	20		0.995493
1614			20	80	0.995493
1616		40	60		1.0
1617	80	20			0.995493
1618	40		20		1.0
1620		80	20		0.995493
1621	60	20	20		0.99255
1622	80	20			0.995493
1623	20	20	40	20	0.994159
1625		33		66	0.997452
1626		33		66	0.997452
1629		66	33		0.997452
1630		66	33		0.997452
1632		33		66	0.997452
1635			33	66	0.997452
1636	33			66	0.997452
1637		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain