SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3256

Length: 1196 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3256

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp\|Q6NLS8.1\|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	peptidyl-trna mitochondrial-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA hydrolase.	EC:3.1.1.29	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	77%
Blast2go	RNA processing	GO:0006396	Biological Process	77%
Blast2go	aminoacyl-tRNA hydrolase activity	GO:0004045	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidyl-tRNA hydrolase	IPR001328	-	0.0	-
Sma3	Peptidyl-tRNA hydrolase, conserved site	IPR018171	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQJ5

Fln msg:

Fln protein: MFAVYIQMWHIRCQTQAISCRRMVSCPLQQLGYSYIHGSLHDRPKPWLIVGLGNPGQKFEGTRHNVGFEMIDSIAQTEGISINITLCKALCGKGHIGNTPVLLAKPQTFMDLSGESVGPLTAYYKIPIHHVLLMFDDMELPCGILRLNQNGGHGGHNGVKSVMQTFKKIQDFARLRIGIGKPPGNMDPKAYLLQTFSSSAREKVNIALKEGVEAARLLTSEGFSESARHFNLKQKYKHQKVDYLDFGRKNC*

Protein Length: 253

Fln nts: ATGGGGGGGGGTTCTTGCTGACAATACGAAATTGTTTAAGCGAGGAGAAGCAGAAGCTATTCATCTGATTCAGGTCAAGGTGGAAACCTCAAGCACCACTTACCGCAGTATTATCAAGAGTTGAATGACATCAGGACGGCAGAGTGTTA_-_ATGTTTGCAGTGTACATCCAAATGTGGCATATACGTTGTCAAACACAAGCAATCTCTTGTAGACGCATGGTTTCTTGTCCATTACAACAGCTGGGATACTCATACATTCATGGTTCTTTGCATGATAGGCCAAAGCCCTGGCTAATTGTTGGTTTAGGCAATCCAGGGCAGAAGTTTGAAGGCACAAGGCATAATGTTGGCTTTGAGATGATTGATTCTATTGCTCAAACTGAAGGGATTTCTATTAACATAACTCTTTGTAAAGCACTGTGTGGAAAAGGCCATATTGGTAATACACCAGTTCTTCTTGCCAAACCCCAAACTTTTATGGACCTGAGCGGCGAATCTGTTGGGCCTCTCACAGCATATTATAAAATACCTATTCACCATGTGCTTCTGATGTTTGATGATATGGAGTTGCCATGTGGCATATTGCGTCTTAATCAAAATGGTGGACATGGAGGCCATAATGGGGTGAAGAGTGTGATGCAAACTTTCAAAAAGATTCAGGACTTTGCTCGTCTGCGTATTGGTATTGGCAAGCCACCCGGCAATATGGATCCCAAGGCTTATTTGCTCCAAACATTTAGTTCAAGTGCTCGTGAAAAGGTAAACATTGCCTTGAAAGAAGGAGTTGAAGCTGCGAGGCTTCTTACATCAGAAGGCTTTTCTGAGAGTGCTCGTCATTTTAACCTAAAGCAGAAGTATAAGCATCAAAAAGTTGATTATTTGGATTTTGGTAGAAAGAATTGTTAA___TTACATTAGTTGAACGGTAAGGAGGATTGTAAATATTTTTTCCATTTGTCCTCTATGTAGATGATCCAATCATGAATATATATGAATTAGATCATGGAAATCTAATAAGCATTAGATGTTGACCATTTTTAACAGGATATGGCTTGAACATGGTTATGAGAGACTCAAATGACACTCAAATGTTAAACTTTCTTCTCTCCTATGCCTGCTGAAATTCATAACAGTTATCTATTATTTGCTCTTCAATCTTCAGTAATGCACATAACATGATGCCTTGTTCTGGATCAAAAG

Fln Alignment:

Contig3256___VLMFAVYIQMWHIRCQTQAISCRRMVSCPLQQLGYS-YIHGS--LHDRPKPWLIVGLGNPGQKFEGTRHNVGFEMIDSIAQTEGISINITLCKALCGKGHIGNTPVLLAKPQTFMDLSGESVGPLTAYYKIPIHHVLLMFDDMELPCGILRLNQXXXXXXXXXVKSVMQTFKKIQDFARLRIGIGKPPGNMDPKAYLLQTFSSSAREKVNIALKEGVEAARLLTSEGFSESARHFNLKQKYKHQKV
A9NQJ5______________MLLHATYFPVPCMPPRTLAIVRYQMMSSPQVRYACSLHVSGSSSLNNKPTPWLLIGLGNPGKKYEGTRHNVGFEMIDSIAKAEGISLNAIQSKSLIGKGYICNTPVLLAKPQTYINLTGESVGSLAVYYRIPFQHILLMFDMMELPSGILRIQAKGGHGLHNGVKSVINHLKGNRNFPRLCIGIGNPPGSMDSKAYVLQQFSTMEREKMNISLQEGVDATRLLISEGFSQSIDGFNKRQKYKYHKV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
653		33		66	0.997452
677	33		66		0.997452
762	75		25		0.996473
763	75			25	0.996473
764	75	25			0.996473
765	25		75		0.996473
766		25	75		0.996473
768	75	25			0.996473
798			14	85	0.993533
799			85	14	0.993533
802	85			14	0.993533
804	14		85		0.993533
806		14		85	0.993533
810			14	85	0.993533
811	85		14		0.993533
813	85			14	0.993533
817		14	85		0.993533
818	85			14	0.993533
819	85	14			0.993533
820	14		85		0.993533
1008			80	20	0.995493
1107		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain