SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3245

Length: 1438 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3245

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: zinc finger protein 546-like isoform 2 [Macaca mulatta]	-	-	2.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	protein	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 337 - 424

Fln protein: MESAYISNDPLIWGDKDLNVLGELNVPSVSLAQASSGSLLNSNGLAINAPTMHPKLVSTIKTVIEIDNQASQGFGHEEKKISDCGHLILGECSRGDSNSQRCDADDEDIATVPVDLIQNRRPFKCSHGGCNKTFKNPQTLKMHHKTHCSAAAGNNYNYSQQRSGGGGGGAAVTRAAGHNKKIPSRCPVCRKTFVGLYELRRHFGRKHSEGEKMHGCKKCGKRFYIEVDLRDHEKLCGEPIECKCGMKFAFKCNLVAHKKSHPECNDNICSTPRSDQDCKSFSNSKRPCLTSNSCQTNSNISSSAVNFSGCADDTLLQLHELNFSYISGALQINLGC*

Protein Length: 338

Fln nts: TTTTTATTACAATACGCCCAGCCGAAACAATGAAGAAAAAACGCCCTTCAGCAACTCAGATGGCCCGGTTTCAATTCCC_-_ATGGAGTCTGCGTATATTAGTAATGATCCGCTCATATGGGGCGATAAGGATTTGAACGTTCTGGGAGAGTTAAATGTTCCGTCCGTGTCCCTGGCCCAAGCCAGCTCTGGCTCGCTTCTGAATTCGAACGGCCTCGCCATTAACGCCCCCACGATGCATCCCAAATTGGTCTCCACTATCAAAACTGTAATAGAGATTGATAACCAGGCCAGTCAAGGGTTCGGGCATGAGGAAAAGAAAATAAGTGATTGCGGACATCTAATCCTGGGAGAGTGCAGCCGCGGAGATTCTAACTCGCAACGTTGCGATGCAGATGATGAGGACATCGCGACCGTACCGGTGGATCTGATACAAAACCGGCGGCCCTTCAAGTGCTCCCATGGCGGTTGCAACAAGACTTTCAAGAATCCCCAGACGTTGAAAATGCACCACAAGACGCATTGTTCTGCCGCGGCGGGTAATAATTATAATTATTCGCAGCAGCGGAGCGGCGGTGGCGGAGGCGGCGCAGCCGTTACCCGAGCGGCCGGGCACAACAAGAAGATTCCCTCGCGGTGCCCGGTGTGCAGGAAAACTTTTGTCGGGCTTTACGAGCTGAGACGCCATTTTGGGCGAAAGCACTCTGAGGGCGAGAAAATGCACGGCTGCAAGAAATGCGGCAAAAGATTTTACATCGAAGTCGATCTCAGAGACCACGAGAAGCTCTGCGGGGAGCCCATTGAATGCAAATGCGGGATGAAATTTGCCTTTAAATGTAATCTCGTCGCGCACAAGAAAAGCCACCCCGAATGCAACGATAATATTTGCAGCACACCGAGGTCCGACCAGGACTGCAAATCCTTTTCAAATTCGAAGAGGCCATGCCTTACTTCTAATTCTTGTCAAACAAATTCTAATATTTCCTCGTCTGCTGTAAATTTCAGCGGCTGTGCAGACGATACACTCCTGCAGCTTCATGAACTTAATTTCTCTTACATTTCTGGTGCATTACAGATTAACCTTGGGTGTTAA___GATATTTATTTCTTTAATCCATCAATGCAGGGCGGGGTGGCGGGATCTTGCGCCTGTTATGTCCGAATTAGTGGAGTTTTTAATGGAATCCTTCTTGCCCAGGAATAGGCTTCTTGCGGGCGAGCGACCAGTGTTACGAGGTTTGATTGTACGGTTTAGGATGTTGGGTTTGCAGGTTTTAATAAAGGTGAGAAATTTTTAACGGGTCTACTGACATACAATTCTAATTCTAATTCTAAAAATGGAGTTCATGCTTTTTGGTTTTTCCCAGTTAAGGCGCCTACCAGTTGTGGATCCATCGTCTTAATTGGCATTCTCTTCTCAAATATTTCGGTAACAGGGGTTCGC

Fln Alignment:

Contig3245___PTMHPKLVSTIKTVIEIDNQASQ-------GFGHEEKKI-SDCGHLILG-----------ECSRGDSNSQRC----------------DADDEDIATVPVDLIQNRRPFKCSHGGCNKTFKNPQTLKMHHKTHCSAAAGNNYNYSQQRSXXXXXXXXXXXXXXHNKKIPSRCPVCRKTFVGLYELRRHFGRKHSEGEKMHGCKKCGKRFYIEVDLRDHEKLCGEPIECKCGMKFAFKCNLVAHKKSHPECNDNICSTP-----RSDQDCKSFSNS
B8LQV8______________PTMHPNLVSTLKNVISQQNLDDDLHFLHTPHHGFEDAGLASDDGFLNYQTEAGFQPPAEQQNNNNDDNKKKQAQQKNRRSPKLGGDEEDREDRQIATVSVDLIQNRRPFKCAYGGCDKTFKNPQTLKMHHKTHYTDDAAEKRLGEQ----FLNNNTTGNCRAGHNKKIPCRCPVCRRTFVGLYELRRHFGRKHSEGEKMYGCRKCGKRFYIEVDLRDHEKLCGEPIECKCGMKFAFKCNLVAHKKTHPECQDSSHSPPPPPLLPNEDSCSSSSSS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
997		16		83	0.994512
998			16	83	0.994512
1003		83		16	0.994512
1005		16	83		0.994512
1008			83	16	0.994512
1009			16	83	0.994512
1012	83			16	0.994512
1014	83			16	0.994512
1016	16		83		0.994512
1017	83	16			0.994512
1019	83	16			0.994512
1020	16	83			0.994512
1111	88		11		0.923564
1115	87		12		0.992554
1120	87			12	0.992554
1121			87	12	0.992554
1125			87	12	0.992554
1127			87	12	0.992554
1128		12	87		0.992554
1129	12			87	0.992554
1130		12	87		0.992554
1131			87	12	0.992554
1134	11		88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1310	1329	AATTCT AATTCT AATTCT AA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain