SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3226

Length: 843 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3226 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA	-	-	53%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	transcriptional corepressor leunig	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	68%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	68%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	68%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 480 aas, your sequence is shorter than subject: 275 - 931

Fln protein: MGRDGGHLLNGSANGLVGNDSLIRQNQGTANAMATKMYEERLKLPHQRDSMDDGSMKRFGDNVGQLLDANQTNILKSATTPGQPSGQVLHNTAGNMAAALQQVQARNQQLPVATQDIKTEMNSVLSQRSGTSDASLFGVPGAGHSKPNLLSPGANQGGNNLPLKGWPLTGLDQLRPGLLATQKSFIQSPQQYHQIQMLTPQQQQLLLQAQAQGNLTSAPCSNFGDMESRRLRMLLSNRNAVAGKDGQTNAVGDMTQNVGSPLPRPEADMILKMK*

Protein Length: 276

Fln nts: ATGGGCAGAGATGGGGGACATCTTTTAAATGGTTCTGCCAATGGATTAGTTGGTAATGATTCTCTTATCCGACAAAACCAGGGGACAGCAAATGCCATGGCAACAAAGATGTATGAGGAACGTCTAAAGTTACCGCATCAGAGAGATTCCATGGACGATGGATCGATGAAGAGGTTTGGAGACAATGTTGGTCAGCTACTGGATGCAAACCAAACAAATATACTGAAGTCAGCAACCACACCTGGGCAGCCTTCGGGGCAAGTTTTACATAATACAGCAGGTAATATGGCTGCTGCTCTTCAGCAGGTTCAGGCTCGTAACCAACAACTTCCTGTGGCCACACAGGACATCAAAACCGAGATGAACTCGGTACTAAGTCAGAGATCTGGCACTTCAGATGCTTCATTATTTGGAGTACCTGGAGCTGGCCATTCAAAACCAAATTTATTAAGCCCAGGTGCAAATCAAGGAGGAAATAACCTACCTTTGAAGGGCTGGCCCCTGACAGGTCTTGACCAACTTCGACCAGGACTTCTAGCAACACAGAAATCTTTCATTCAATCTCCACAGCAATATCATCAGATTCAGATGTTAACTCCGCAGCAACAACAGCTTTTGCTCCAAGCACAAGCCCAAGGAAATTTGACGTCTGCACCATGCTCTAATTTTGGTGATATGGAAAGCAGAAGACTTCGGATGCTTCTGAGTAACAGGAATGCTGTTGCAGGCAAAGATGGCCAAACTAATGCTGTTGGTGACATGACCCAGAATGTTGGGTCTCCACTGCCACGACCTGAAGCAGACATGATATTGAAGATGAAATAGCTCAAATTCAACAGCAGC

Fln Alignment:

Contig3226___RDGGHLLNGSANGLVGNDS--LIRQNQGTANAMATKMYEERLKLPHQRDSMDDGSMKRFGDNVGQLLDANQTNILKSATTPGQPSGQVLHNTAGNMAAALQQVQARNQQLPVATQDIKTEMNSVLSQRSGTSDASLFGVPGAGHSKPNLLSPGANQGGNNLPLKGWPLTGLDQLRPGLLATQKSFIQSPQQYHQIQMLTPXXXXXXXXXXXQGNLTSAPCSNFGDMEXXXXXXXXXXXNAVAGKDGQTNAVGDMTQNVGSP-------LPRPEADMILKMK
Q9FUY2______________RDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMKRFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMS---PQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIGI------------PGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFHQLNMLTPQHQQQLMLAQQ--NLNSQSVSE----ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVGSSLQPGGSLLPRGDTDMLLKLK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
185	25		75		0.996473
202	25		75		0.996473
211	25		75		0.996473
234		75		25	0.996473
243		75		25	0.996473
246		75		25	0.996473
253	75		25		0.996473
264	25	75			0.996473
308		88	11		0.923564
318		11		88	0.923564
319	11		88		0.923564
354		88		11	0.923564
366	11		88		0.923564
394	12	87			0.992554
407	12		87		0.992554
450		12		87	0.992554
451		12	87		0.992554
453	87			12	0.992554
462		14		85	0.993533
463	14	85			0.993533
465		85		14	0.993533
488	16	83			0.994512
489		16	83		0.994512
490	16		83		0.994512
562	20			80	0.995493
566	20	80			0.995493
570	20			80	0.995493
574	20			80	0.995493
579			20	80	0.995493
580	80	20			0.995493
581	80			20	0.995493
582	80		20		0.995493
732	83		16		0.994512
781	83	16			0.994512
782		16	83		0.994512
784			83	16	0.994512
807	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain