SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3218

Length: 1293 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3218

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	-	-	7.0e-21	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	phosphoglycerate mutase-like protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	71%
Blast2go	catalytic activity	GO:0003824	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTT2

Fln msg: your sequence is shorter than subject: 228 - 252

Fln protein: MAGGALKNKYWVARHGRSIPNEKGLIVSSLANGVLPEYGLAAEGILQAKAAAELFLKEIRKESIPSEKVHIYFSPFSRTRQTAEVFASVLNLPFDSPQIKVIEALRERYFGPQLELQSHDHYKEIWALDERDPFAPPEGGESVADVASRLATILLMTEAECEGYAILLVAHGDPLQIFQTILHATIHSDSFEKNGILDTNLDAVISAPILSQHRKFSLLTGELRRVM*

Protein Length: 229

Fln nts: ATGGGGGTGGTAGCGTTAACGGACCGCAATGGGACTGGGAATGGGCATATGCAGCTTAATGGGCGAAAACGGAACGACAAAGGGTTGACGACCACGTACTCCCGACCAGGGAAAAACAGCATGGAAAGACAAAAGTGAGAAGTGTGCGTTAAATAGAATTTGGGGCGAGGGGAAGGGCAGTATGTAAGCTGCCCGGCACATTGTCAGAGGAGAATTATCGGTGAAGTGAAGAGGAGA_-_ATGGCGGGAGGAGCTTTGAAGAACAAGTATTGGGTTGCGAGGCATGGGCGCAGCATCCCCAATGAGAAGGGTCTCATCGTCTCCTCTCTGGCCAATGGTGTCTTACCTGAATATGGACTGGCGGCTGAAGGGATTCTTCAAGCAAAAGCTGCAGCAGAGTTGTTTCTCAAGGAAATCAGAAAAGAAAGCATTCCTTCTGAAAAAGTTCATATATACTTTTCACCATTCAGTAGGACAAGACAAACAGCAGAGGTTTTTGCTAGTGTACTGAACTTGCCTTTTGACAGCCCTCAAATTAAGGTTATAGAGGCATTGAGGGAACGATATTTTGGACCACAGCTTGAACTTCAATCTCATGATCATTACAAAGAAATTTGGGCACTTGATGAAAGGGATCCTTTTGCTCCACCTGAAGGAGGAGAAAGTGTGGCAGATGTTGCTTCTAGGCTTGCCACCATTTTGTTGATGACGGAAGCAGAATGTGAAGGATATGCCATCCTTCTTGTTGCACATGGTGATCCTCTACAAATTTTCCAAACAATTCTACATGCAACTATCCATAGCGATTCTTTTGAGAAGAACGGAATATTAGACACAAATCTAGATGCAGTAATTAGTGCTCCTATATTATCACAGCACCGGAAGTTTTCTCTTTTAACTGGAGAGCTTCGTCGAGTTATGTGA___ATGTTTATGGAAGTTATTTCTTGTTCCCCATCCCACTAGTACATTGGTTTTTCCATCTTTCTTCCATTAACACAGGGTTTAAATATCTTATAAATGTTTTATGTACTCGTTTCCCACTAGAAGTAATAGGCTACAATCACTAATTTTTTTAATAGAATGTGACACAGATTTGATGACTATGTGGAATAGCATCTATTTTATAGTTCCATTCCTTTTGCTGATATCCAGTTGTTCCAAAGTGAGAGTTAAGGATGGAAAGTCAAGAAACATTTTTTATTGTATTCCTGGTTCGTTGTTCTTGTTGCATCCTATGATGCCGTCCTGCATTTTTTGACATAATTTTTTTTGTTATATATTATTTAAGGTTAGGAC

Fln Alignment:

Contig3218___MAGGALKNKYWVARHGRSIPNEKGLIVSSLANGVLPEYGLAAEGILQAKAAAELFLKEIRKESIPSEKVHIYFSPFSRTRQTAEVFASVLNLPFDSPQIKVIEALRERYFGPQLELQSHDHYKEIWALDERDPFAPPEGGESVADVASRLATILLMTEAECE-------------------------GYAILLVAHGDPLQIFQTILHATIHSDSFEKNGILDTNLDAVISAPILSQHRKFSLLTGELRRVM
A9NTT2______________MAGGAFKNKYWVARHGRSIPNEKGLIVSSLANGVLPEYGLAAEGVLQAKAAAELFLKEIRKEGIPFEKVRIYLSPFSRTRQTAEAFTSLLNLPFDSPQIKVTEALRERYFGPRLELQSHDHYTEIWALDERDPFAPPEGGESVADVASRLSTILAMTEAECEGTTIDLKVYAAQQHLGGIPNTLAWFGYAILLVAHGDPLQIFQTILHATLDSHSCEKNGILDANLGAVMSAPILSQHRKFSLFTGELRRVM

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
701	14			85	0.993533
704			14	85	0.993533
708	14		85		0.993533
709		14	85		0.993533
730	14		85		0.993533
732	14	85			0.993533
735		85		14	0.993533
738	14			85	0.993533
953		33	66		1.0
995	87		12		0.992554
996			87	12	0.992554
997		12	87		0.992554
1000			12	87	0.992554
1001	12			87	0.992554
1002	87	12			0.992554
1003	87	12			0.992554
1004	87			12	0.992554
1006	87		12		0.992554
1007			12	87	0.992554
1012		12		87	0.992554
1013	87			12	0.992554
1014	87	12			0.992554
1054	87			12	0.992554
1056	87		12		0.992554
1057	87	12			0.992554
1158	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain