SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3216

Length: 2161 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3216
ATGCCTCTCTACTGCAAGAATTCATTCAAAGCTCTCCGAGTCTCAAACGTTCGGATCATCCACACAGGGGCCAACAATGTGGCCGAGGACGATCACCAAGCCCGGCATTAATGGCGGAGACGATGCAGAGGAGGGGCCAAGAATTGGCCCAGGGCTGAGAAAGAAAGGGATGGGTGTGAGGGCGTGGTTGCTGCTGGACGCCTCGGGGCAGGCGCAGGTCGTGGAGGCTGGGAAACATGCGATTATGCGGCGCACGGGCCTCCCGGCTCGGGACCTTCGCATTCTAGACCCTCTGCTGTCTTATCCTTTCACCATACTTGGCCGAGAGCGAGCCATTGTGATCAATTTGGAGCACATCAAGGCAATCATCACTGCCCAGGAGGTCCTTTTGCTCAATTCAAGAGATCCTGCTGTGGTTCCCTTCATTAACGACCTCCAGCGTAGACTTCATGTGCCCGTCCAACAGGAAGGTCAAAATAGTGATACCGATCCAGATGTTGGCAATAAGGATATTGTAAGAACAACTCCATCTGGCACGATGCCAACTTTATCAAGTTCTGTGAACAAGGGAGAACTTCAACAGCTTAAAAATTTACATGAAAATGTCTTTCTAGAGAAACATGATACATGGATAGATGGTTCAAAGCCAGATACAAATGCCTATGAAAATGGTCCAAAAGTTCTGCCGTTTGAATTTAGAGCATTGGAAGCTTGCCTTGAAGCTGCATGTAGCTGCTTAGAATCTGAGACTGCTGTTCTAGAGGAAGAGGCATATCCAGCACTGGATGAGTTGACATCGAAAATCAGTACTCTCAATCTCGAAAGAGTTAGACAGATCAAAAGTCGTTTGGTTGCAATATCTGGTCGTGTTCAAAAGGTAAGAGATGAACTAGAGCACTTACTTGATGATGACGAAGATATGGCTGAGATGTATTTAACTGATAAGCTGAGGCAGCATTATCTGGATGGAAATGCCTCACCCTCTTCCTTTTATGGGGGAAGAGATGGAGTGGAGTATGAACCAACTCAGTCTGATGCAGAGGAGGAAAGATCACTGCCTGAGAGACATACTGATCCACAAAATCTACTAAGCTCTTCTGGTAACCCTGTTGAAGGTCCGTTAGTTGAAACTAAAGCATCAAGTAGAAATGAGTACAGCAGCGCTTGTAGCAGCAGCCACAGTGGTACTAAGTCTCTTGATGTGGAGGAACTGGAGATGCTTTTAGAGGCTTACTTTGTCCAGATTGATAGTACACTTAACAAGTTATCAGCTCTGAGAGAGTATGTTGACGATACAGAGGATTACATCAATATCATGCTTGATGACAAACAAAATCATCTTCTCCAGATGGGTGTCATGTTAACCACTGCGACTCTTGTCATCAGTGCATTTGTTGTCGTAGCAGGGGTATTTGGCATGAACATCACTATTGATTTATTTGATAAAGAGCGTGCCGGCCTTCCTGAATTTTTGTGGACTGTTGGTGGGTGTGCGACAGGTAGTATATTTCTCTACATTGTAGCAATTGCATGGTGTAAACATAGGCGATTACTTGAGTGAGCCAGTGCTTATTTTGCAACAGGTTATTCTTCCAAGACAATCTAATTACTTTTTCTGAATGCTAAGCTCATTTTTCAGATTTTCTTTTTTCTAGTATTATTATGTAGTAATTGTTCATTAAACAATATCCAACTAATAGTTGAATTTCATTTGAGAGATCAAGAAGTAAAGTCCTTGAATTATTGCTCCATCCTGGGAGTTACGTTTGAAGACATGACTATCAAATATTGATGTTATTTTGAATTGTTTTGAGAGTGAATTCTTTTTATTACAATCATAAATCTATTATTGAAAAGAACAGTCGAAAAGTTGAAGGATGTAGTGCTATTGTTGCTTACACAGAATTCCTGTGTCAGCTTTTTGAACTGAATTTACTCCTGTACCAAATTGGTCAATAGCTTATGGCTGGTATTCTGATACGATGAATAAAAAATGTTTATATCTAGATTTTGGGTTTTGATCCATGGATGTTTTCAACCTTTAAGATTATGATTCGCTATTAGAATTCTTTCTAATGCAAATTATTGCAACTATTGTTCTACCCTAGTTTCTACAACTATCTCTGTTGCCCATTTTGAATAAAATTTACTTCTTTACTTC

Ace file of the UniGene sp_v2.0_unigene3216

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9S827_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	magnesium transporter	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	68%
Blast2go	magnesium ion transport	GO:0015693	Biological Process	68%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQP2

Fln msg:

Fln protein: MWPRTITKPGINGGDDAEEGPRIGPGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFINDLQRRLHVPVQQEGQNSDTDPDVGNKDIVRTTPSGTMPTLSSSVNKGELQQLKNLHENVFLEKHDTWIDGSKPDTNAYENGPKVLPFEFRALEACLEAACSCLESETAVLEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGVEYEPTQSDAEEERSLPERHTDPQNLLSSSGNPVEGPLVETKASSRNEYSSACSSSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGVFGMNITIDLFDKERAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE*

Protein Length: 496

Fln nts: ATGCCTCTCTACTGCAAGAATTCATTCAAAGCTCTCCGAGTCTCAAACGTTCGGATCATCCACACAGGGGCCAACA_-_ATGTGGCCGAGGACGATCACCAAGCCCGGCATTAATGGCGGAGACGATGCAGAGGAGGGGCCAAGAATTGGCCCAGGGCTGAGAAAGAAAGGGATGGGTGTGAGGGCGTGGTTGCTGCTGGACGCCTCGGGGCAGGCGCAGGTCGTGGAGGCTGGGAAACATGCGATTATGCGGCGCACGGGCCTCCCGGCTCGGGACCTTCGCATTCTAGACCCTCTGCTGTCTTATCCTTTCACCATACTTGGCCGAGAGCGAGCCATTGTGATCAATTTGGAGCACATCAAGGCAATCATCACTGCCCAGGAGGTCCTTTTGCTCAATTCAAGAGATCCTGCTGTGGTTCCCTTCATTAACGACCTCCAGCGTAGACTTCATGTGCCCGTCCAACAGGAAGGTCAAAATAGTGATACCGATCCAGATGTTGGCAATAAGGATATTGTAAGAACAACTCCATCTGGCACGATGCCAACTTTATCAAGTTCTGTGAACAAGGGAGAACTTCAACAGCTTAAAAATTTACATGAAAATGTCTTTCTAGAGAAACATGATACATGGATAGATGGTTCAAAGCCAGATACAAATGCCTATGAAAATGGTCCAAAAGTTCTGCCGTTTGAATTTAGAGCATTGGAAGCTTGCCTTGAAGCTGCATGTAGCTGCTTAGAATCTGAGACTGCTGTTCTAGAGGAAGAGGCATATCCAGCACTGGATGAGTTGACATCGAAAATCAGTACTCTCAATCTCGAAAGAGTTAGACAGATCAAAAGTCGTTTGGTTGCAATATCTGGTCGTGTTCAAAAGGTAAGAGATGAACTAGAGCACTTACTTGATGATGACGAAGATATGGCTGAGATGTATTTAACTGATAAGCTGAGGCAGCATTATCTGGATGGAAATGCCTCACCCTCTTCCTTTTATGGGGGAAGAGATGGAGTGGAGTATGAACCAACTCAGTCTGATGCAGAGGAGGAAAGATCACTGCCTGAGAGACATACTGATCCACAAAATCTACTAAGCTCTTCTGGTAACCCTGTTGAAGGTCCGTTAGTTGAAACTAAAGCATCAAGTAGAAATGAGTACAGCAGCGCTTGTAGCAGCAGCCACAGTGGTACTAAGTCTCTTGATGTGGAGGAACTGGAGATGCTTTTAGAGGCTTACTTTGTCCAGATTGATAGTACACTTAACAAGTTATCAGCTCTGAGAGAGTATGTTGACGATACAGAGGATTACATCAATATCATGCTTGATGACAAACAAAATCATCTTCTCCAGATGGGTGTCATGTTAACCACTGCGACTCTTGTCATCAGTGCATTTGTTGTCGTAGCAGGGGTATTTGGCATGAACATCACTATTGATTTATTTGATAAAGAGCGTGCCGGCCTTCCTGAATTTTTGTGGACTGTTGGTGGGTGTGCGACAGGTAGTATATTTCTCTACATTGTAGCAATTGCATGGTGTAAACATAGGCGATTACTTGAGTGA___GCCAGTGCTTATTTTGCAACAGGTTATTCTTCCAAGACAATCTAATTACTTTTTCTGAATGCTAAGCTCATTTTTCAGATTTTCTTTTTTCTAGTATTATTATGTAGTAATTGTTCATTAAACAATATCCAACTAATAGTTGAATTTCATTTGAGAGATCAAGAAGTAAAGTCCTTGAATTATTGCTCCATCCTGGGAGTTACGTTTGAAGACATGACTATCAAATATTGATGTTATTTTGAATTGTTTTGAGAGTGAATTCTTTTTATTACAATCATAAATCTATTATTGAAAAGAACAGTCGAAAAGTTGAAGGATGTAGTGCTATTGTTGCTTACACAGAATTCCTGTGTCAGCTTTTTGAACTGAATTTACTCCTGTACCAAATTGGTCAATAGCTTATGGCTGGTATTCTGATACGATGAATAAAAAATGTTTATATCTAGATTTTGGGTTTTGATCCATGGATGTTTTCAACCTTTAAGATTATGATTCGCTATTAGAATTCTTTCTAATGCAAATTATTGCAACTATTGTTCTACCCTAGTTTCTACAACTATCTCTGTTGCCCATTTTGAATAAAATTTACTTCTTTACTTC

Fln Alignment:

Contig3216___MWPRTITKPGINGGDDAEEGPRIGPGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFINDLQRRLHVPVQQEGQNSDTDPDVGNKDIVRTTPSGTMPTLSSSVNKGELQQLKNLHENVFLEKHDTWIDGSKPDTNAYENGPKVLPFEFRXXXXXXXXXXXXXXXXTAVLEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRXXXXXXXXXXXXMAEMYLTDKLRQHYLDGNASPSSFYGGRDGVEYEPTQSDAEEERSLPERHTDPQNLLSSSGNPVEGPLVETKASSRNEYSSACSSSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGVFGMNITIDLFDKERAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE
B8LQP2______________MWPRTVTKTATNGGDDAEEGPRIGAGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFIADLQRRLNVPTQQEGRNSDTDADVANKDILRTSPSGMMPTLSSSMNNGELQQLKKFRENVFLEKPDTWGDGSKPDMNAYENGPKVLPFEFRALEACLEAACSCLESETTILEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGMEYEPTQSDAEEERSLLERHTDPQNLLSSSGNHVEGPLAATKAPSRNEYSSSSSGSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGIFGMNITIDLFDEDRAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
863		10	90		0.90298
864	10		90		0.90298
866		90		10	0.90298
946	14		85		0.993533
974			80	20	0.995493
1000	75		25		0.996473
1275	12			87	0.992554
1280			87	12	0.992554
1283		12		87	0.992554
1286		12	87		0.992554
1329	80			20	0.995493
1330	75			25	0.996473
1454	18		81		0.999994
1753		90	9		0.999872
1883	18		81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain