SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3200

Length: 793 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3200 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9SWG6_RICCO	-	-	82%
FL-Next	sp=Probable 125 kDa kinesin-related protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	125 kda kinesin-related	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	microtubule-based movement	GO:0007018	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	microtubule	GO:0005874	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
456		80	20		0.999996
519	81		18		0.999994
565		12	87		0.992554
566		12	87		0.992554
568	12	87			0.992554
653			60	40	1.0
654	60		40		1.0
657	60			40	1.0
660		40	60		1.0
662			40	60	1.0
667	60		40		1.0
669			60	40	1.0
672		40	60		1.0
675	60	40			1.0
676	60		40		1.0
781		33	66		0.997452
782	66	33			0.997452
783		33	66		0.997452
784		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain