SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3140

Length: 2074 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3140
CGTCGTGACCTTGGCTGTCACTCAGTCCGCGGTCAATGGTGGAACCTCCGTGTTCGTCTCTTCCATGTCATGCCGAACGAGAAATACCGACTAACCGACAGGCGGAACCCCACAGAAAGGAATGGAACTCTAAATACTCCCTCATGTGTCAGAGAAAGGAAAGGAACTCTAAATACTCCCTCATCTATCACCTGCAATCCCTGCTCTATCATGCGACCATAAAGTTGCTTAGATAGAGCGGGTTAAATATGGTGAAATCCACGAAGAAAGACGCTCACGATGTCAAGACAGAGGATAACGCTGAGAATCGCGAGAGGCAGAGGTTGCGTAAGCTGGCATTTAGCAGAAAATTAATCTCTCAGACAAGAGCAAACCCTAGTCGTCCATTACAACCTACGAAAACCATTCTCAACTGCGATGGCAAAGATATCGTGAAGAAAGGCCAGAGGAAAAGTAAATACCTCTTTTCCTTCCCTTGCCTGATAGCGCCTGTTTCCGGTGGCAAGATGGGAGAATTGGTTCACTTGGACACTAAAAATCCTGTTCTCTACGTTGATTTGCCTCAGGGGAGGCTGAAGTTCTTCGGAACGATCATCTATCCAAAGAACAAGTATCTCACCCTACACTTCATGAGGGGATCAGGAAGCGTAGTCTGTGAGGATTCTTTTGACAGTCTAGTTGTATTTTCCGATGTATGGTGGATTGGAACAAAAGAAGAAAATCCAGAAGAGGTGCAATTAGATTTCCCAAAGGAACTAAAACAGGAGAAGCATGCAGAGTTTGACTTTAAAGGTGGAGCTGGCACAATTGCTCACCATAAAAGTGTTGCCGTGGCAAAACTTCCTTCGAAGGAATGTGATGTAGCACTAAATCCTGAAACTGATTTCAAGCTGGATCAGTTGCAAGATTCTCAGCAGCCGAAACCTCGCATTAGCAAGCACAATATAGAAAGTTTGGAAGAAGAAATAAAACCAACACCAGTACGGTCTTCTGCAAGGACAGCAGGAAAGACATTCAAGTTTGCCGATTCTCCTTCTGAAGATGATATAGACAGCACAGGAAATGATTCTAGTTCATCAGACTCAGGACAGGCACAGCAAACAAAGAAACAGAAAGTGAATCGCAATCTTGGCACTGCACTTGACGAAGCAGTGGCAGAAGATTTTACCTCTGCTTTGATTGACACTATACATGACAAAAAGAAGACAGCGTTAGATGAGGTGCATAATGCTTCCTCATCTGCTCAGAAGACTCCATCATCACAAAAGAAACCCAAAGAAACTCCAAGTAAATTGGTGGGCACAACTAAAACAGTTCTTGTTCAATCCAGCATGTCCTCCTTTCTACAAAAGCCTGAGGAAAAGAGCTCACAAAAAAGTGAAAAGACTCCAGTAGGGACCAAAGGGTCAGCTCAGAGGAGACGGTCAACAGATTTGAAGGGAAAATCTAAAAAAACCAAGGATGTAGAAGAGAAACTGAGCGATGAGGATATTATAGAAGAAGTGCCCAAAGAGTCCAAGAAAGTTGTAAGGCGTACATCTGGAAGAGGAGAAAGTGCAAGTAAAGGAAAACAAATTAAGTCTCCAATAAAGCTGGATAGTTCTGATGAAGAGAAAACCTCAAGTGAATCAGAGGATGGTGATGACAGTGATGAAGACTGGACAGGCTAACTGTCATTGGATATGAAAGGACGATGCCATGGTGATTCCACATTACATTTAATAGCTCCCTCCCCTGATTTTAGACCTGGAGAAACACCATTTGGAATTTCCAGTGTTATTGTAACATTGATATCATATCCTGACCACGAATTAAATTCGTGGTCACATTTACTTGGCAAATAATTTTTTTTAGCTATTGCCTTTTATTGTATTCCTAGGAGTTATTGTAATATAATTCAATGTGTCAAATCGACACTAACGCTTAGGATGCACGTTAACGTCTCATGTTTCAAAATGACTATAATCTTCCAAGTTTGCAAATTATCATTTAGTATGCGTCTTGATGTCTCACATTTCGAAACAACGATAAATTCGTGGTCACGTTTTGGCAAATAAAATTTTATTAGCTAATT

Ace file of the UniGene sp_v2.0_unigene3140 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ROOT HAIRLESS 1 [Arabidopsis thaliana]	-	-	47%
FL-Next	sp=DNA-binding protein RHL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	47%
Blast2go	root hairless 1	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	root hair initiation	GO:0048766	Biological Process	58%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	58%
Blast2go	DNA binding	GO:0003677	Molecular Function	58%
Blast2go	protein binding	GO:0005515	Molecular Function	58%
Blast2go	nucleolus	GO:0005730	Cellular Component	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O81242

Fln msg: your sequence is longer than subject: 474 - 355

Fln protein: MVKSTKKDAHDVKTEDNAENRERQRLRKLAFSRKLISQTRANPSRPLQPTKTILNCDGKDIVKKGQRKSKYLFSFPCLIAPVSGGKMGELVHLDTKNPVLYVDLPQGRLKFFGTIIYPKNKYLTLHFMRGSGSVVCEDSFDSLVVFSDVWWIGTKEENPEEVQLDFPKELKQEKHAEFDFKGGAGTIAHHKSVAVAKLPSKECDVALNPETDFKLDQLQDSQQPKPRISKHNIESLEEEIKPTPVRSSARTAGKTFKFADSPSEDDIDSTGNDSSSSDSGQAQQTKKQKVNRNLGTALDEAVAEDFTSALIDTIHDKKKTALDEVHNASSSAQKTPSSQKKPKETPSKLVGTTKTVLVQSSMSSFLQKPEEKSSQKSEKTPVGTKGSAQRRRSTDLKGKSKKTKDVEEKLSDEDIIEEVPKESKKVVRRTSGRGESASKGKQIKSPIKLDSSDEEKTSSESEDGDDSDEDWTG*

Protein Length: 475

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCGCGGTCAATGGTGGAACCTCCGTGTTCGTCTCTTCCATGTCATGCCGAACGAGAAATACCGACTAACCGACAGGCGGAACCCCACAGAAAGGAATGGAACTCTAAATACTCCCTCATGTGTCAGAGAAAGGAAAGGAACTCTAAATACTCCCTCATCTATCACCTGCAATCCCTGCTCTATCATGCGACCATAAAGTTGCTTAGATAGAGCGGGTTAAAT_-_ATGGTGAAATCCACGAAGAAAGACGCTCACGATGTCAAGACAGAGGATAACGCTGAGAATCGCGAGAGGCAGAGGTTGCGTAAGCTGGCATTTAGCAGAAAATTAATCTCTCAGACAAGAGCAAACCCTAGTCGTCCATTACAACCTACGAAAACCATTCTCAACTGCGATGGCAAAGATATCGTGAAGAAAGGCCAGAGGAAAAGTAAATACCTCTTTTCCTTCCCTTGCCTGATAGCGCCTGTTTCCGGTGGCAAGATGGGAGAATTGGTTCACTTGGACACTAAAAATCCTGTTCTCTACGTTGATTTGCCTCAGGGGAGGCTGAAGTTCTTCGGAACGATCATCTATCCAAAGAACAAGTATCTCACCCTACACTTCATGAGGGGATCAGGAAGCGTAGTCTGTGAGGATTCTTTTGACAGTCTAGTTGTATTTTCCGATGTATGGTGGATTGGAACAAAAGAAGAAAATCCAGAAGAGGTGCAATTAGATTTCCCAAAGGAACTAAAACAGGAGAAGCATGCAGAGTTTGACTTTAAAGGTGGAGCTGGCACAATTGCTCACCATAAAAGTGTTGCCGTGGCAAAACTTCCTTCGAAGGAATGTGATGTAGCACTAAATCCTGAAACTGATTTCAAGCTGGATCAGTTGCAAGATTCTCAGCAGCCGAAACCTCGCATTAGCAAGCACAATATAGAAAGTTTGGAAGAAGAAATAAAACCAACACCAGTACGGTCTTCTGCAAGGACAGCAGGAAAGACATTCAAGTTTGCCGATTCTCCTTCTGAAGATGATATAGACAGCACAGGAAATGATTCTAGTTCATCAGACTCAGGACAGGCACAGCAAACAAAGAAACAGAAAGTGAATCGCAATCTTGGCACTGCACTTGACGAAGCAGTGGCAGAAGATTTTACCTCTGCTTTGATTGACACTATACATGACAAAAAGAAGACAGCGTTAGATGAGGTGCATAATGCTTCCTCATCTGCTCAGAAGACTCCATCATCACAAAAGAAACCCAAAGAAACTCCAAGTAAATTGGTGGGCACAACTAAAACAGTTCTTGTTCAATCCAGCATGTCCTCCTTTCTACAAAAGCCTGAGGAAAAGAGCTCACAAAAAAGTGAAAAGACTCCAGTAGGGACCAAAGGGTCAGCTCAGAGGAGACGGTCAACAGATTTGAAGGGAAAATCTAAAAAAACCAAGGATGTAGAAGAGAAACTGAGCGATGAGGATATTATAGAAGAAGTGCCCAAAGAGTCCAAGAAAGTTGTAAGGCGTACATCTGGAAGAGGAGAAAGTGCAAGTAAAGGAAAACAAATTAAGTCTCCAATAAAGCTGGATAGTTCTGATGAAGAGAAAACCTCAAGTGAATCAGAGGATGGTGATGACAGTGATGAAGACTGGACAGGCTAA___CTGTCATTGGATATGAAAGGACGATGCCATGGTGATTCCACATTACATTTAATAGCTCCCTCCCCTGATTTTAGACCTGGAGAAACACCATTTGGAATTTCCAGTGTTATTGTAACATTGATATCATATCCTGACCACGAATTAAATTCGTGGTCACATTTACTTGGCAAATAATTTTTTTTAGCTATTGCCTTTTATTGTATTCCTAGGAGTTATTGTAATATAATTCAATGTGTCAAATCGACACTAACGCTTAGGATGCACGTTAACGTCTCATGTTTCAAAATGACTATAATCTTCCAAGTTTGCAAATTATCATTTAGTATGCGTCTTGATGTCTCACATTTCGAAACAACGATAAATTCGTGGTCACGTTTTGGCAAATAAAATTTTATTAGCTAATT

Fln Alignment:

Contig3140___STKKDAHDVKTEDNAENRERQRLRKLAFSRKLISQTRANPSRPLQPTKTILNCDGKDIVKKGQRKSKYLFSFPCLIAPVSGGKMGELVHLDTKNPVLYVDLPQGRLKFFGTIIYPKNKYLTLHFMRGSGSVVCEDSFDSLVVFSDVWWIGTKEENPEEVQLDFPKELKQEKHAEFDFKGGAGTIAHHKSVAVAKLPSKECDVALNPETDFKLDQLQDSQQPKPRISKHNIESLEEEIKPTPVRSSARTAGKTFKFADSPSE
O81242______________SSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHGTDIIRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQAENTEFDFQGGAGGAASVKKLASPEIGSQPTETD-SPEVDNEDVLSEDGEFLDDKIQVTPPVQLTPPVQVTPVRQSQRNSGKKFNFAETSSE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
300		75		25	0.996473
489	12			87	0.992554
492			87	12	0.992554
516		14		85	0.993533
660		20		80	0.995493
662		20		80	0.995493
663	20		80		0.995493
664	80			20	0.995493
1894		10	90		0.90298
1895	90	10			0.90298
1896		10	90		0.90298
1897	10		90		0.90298
1898			90	10	0.90298
1914		22		77	0.999999
1915		22		77	0.999999
1916		33		66	1.0
1918	22	77			0.999999
1919		22		77	0.999999
1920	14	14		71	0.984337
1965		25	75		0.996473
1966		25	75		0.996473
1967		25	75		0.996473
1968		25	75		0.996473
1969	25			75	0.996473
2035		66	33		0.997452
2036	33	66			0.997452
2040	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain