SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3105

Length: 2246 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3105
CGTCGTGACCTTGGCTGTCACTCAAATTCTACGTCGTGACCTTGGCTGTCACTCAATTTTCCAATAATCAATTTATCCATTTGACATACTCATGTAATACTCAGACAAGTTGTGCTCGAAGATCCGTACTGGTCCGCAAAATAGTTGCCTTGAAGATTCATACTACTGCGAAAGGATCTGAGATGTCTCAACTGCTGTTACGAAGGCTCAGGGTCTCCAAATATCGTAGTGTAACAGGATTCAGTCCCTCTTTTCCAGGGCCTTGTCTAAATGGGCTTCCAATCCTTACAAAATTGGCGGATAAGCCTGAATCTACCTCCAAATTTGATCGGGGTTGGGTATGCAGTAATACTTGGGAGTGCAGAAGGATAACTACTGCCACAATAAACAGAGGCCTGAATGTCATCCCCGATACTCTCGATAAAAATAGCGAAATTTATATTCAAAATTACGAGGCGACGGAAAAGCTTTTAGCCGAGCTTCACCAGAATATTGATAAGGTGCTGAAAGGAGGGGGTCCTAAAGCAGTAGAAAGGAACCGTGCGAGGAAGAAGCTGCTGGCTAGGGAGCGCATTGACCGTGTACTGGATCCTGGATCCTCATTCCTTGAACTGTCTCAGCTTGCAGGACATGAGTTATATGAGGAGCCGTTACCCTCTGGAGGGATTGTGACAGGAATAGGGCCCGTTAATAGGAAGTTGTGTTTGTTTGTAGCCAATGACCCTACTGTCAAAGGTGGGACTTATTATCCTATCACCATTAAGAAGCATCTTCGTGCACAAGAAATTGCTGCACAGTGCAATCTACCTTGCATATATCTTGTTGATAGTGGTGGTGTTAATCTTCCAAGACAGGCAGATGTCTTTCCTGACAAAGAACATTTTGGAAGAATATTTTACAATCAGGCACAGATGTCAGCTGCAGGAATTCCACAGATTGCTTTGGTATTAGGTTCTTGCACTGCTGGAGGGGCTTATATTCCTGCAATGGCCGATGAAAATGTTCTTGTCAAAGGCAACGGCACTATTTTTTTAGCTGGACCTCCTCTTGTCAAGGCTGCAACTGGAGAAGAAGTGTCTGCAGAGGATTTAGGAGGTGCTTCAGTGCATTGTAAAATCTCTGGAGTTTCTGATTATTATGCCAATGATGAACTGCACGCACTTGACATTGGAAGGAGAATAGTGAAAAACTTGCATATGGCTGGAAATGAGGAGAAAATCAAAGGTTGGACATGTCCTATTTCTGAAGATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGTCTGCAGATCGTAAACAGTCATTTGATGTCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGAAACAATGGCATTTTATTCACAGAATCTGCTCTAAAAGGTGCTCACTTCATACAGCTGTGTACACAGCGCCAGATTCCCTTGATATTTCTTCAGAATATCACAGGATTTATGGTTGGCTCAAGATCAGAAGCAAGCGGTATTGCCAAGGCAGGAGCGAAGATGGTGATGGCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAATTTTTTGTTTCTTTGGCCCACAGCCCGAATTTCAGTCATGGGAGGTGCCCAGGCTGCTGGAGTTCTTGCTCAAATTGAAAGGGACAATCGCAAGCGACAGGGTATTCAGTGGAGCACAGAGGAGGAAGAAGCCTTAAAAGCCAAGGTGACAGAGTCTTATGAAAGAGAAGGAAATCCATATTATGCAACTGCAAGACTCTGGGATGATGGCATTATTGATCCTGCAGATACAAGAACGGTTTTAGGTTTGGCTTTATCTGCTTCAAAACAAGACGCTTCTGTTAAAACAACATACGGTGTTTTTAGGATGTAAGTGGAAAAGCACTGTGGTGCCAAGAAAGTTGTTGTAAGGCATCAATAAAAGTTCAAAAGTTCAAAATTTGTAAATACATTGTTTGAACTAATGGTAAATTTTCCAGCAATTCCATAAAGTTTTTCAGAAACAAATACCTTTCATGGAAAGTCTTAAGACAGTCAAAGTCGTAATATTTGTTATTTCAAAAGTACACAAATTTTCATCGAAAATTATAGTTGTGGC

Ace file of the UniGene sp_v2.0_unigene3105

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Oryza sativa Japonica Group]	-	-	76%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	methylcrotonoyl- carboxylase beta mitochondrial-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	85%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	85%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	85%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg:

Fln protein: MSQLLLRRLRVSKYRSVTGFSPSFPGPCLNGLPILTKLADKPESTSKFDRGWVCSNTWECRRITTATINRGLNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVSAEDLGGASVHCKISGVSDYYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM*

Protein Length: 614

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTACGTCGTGACCTTGGCTGTCACTCAATTTTCCAATAATCAATTTATCCATTTGACATACTCATGTAATACTCAGACAAGTTGTGCTCGAAGATCCGTACTGGTCCGCAAAATAGTTGCCTTGAAGATTCATACTACTGCGAAAGGATCTGAG_-_ATGTCTCAACTGCTGTTACGAAGGCTCAGGGTCTCCAAATATCGTAGTGTAACAGGATTCAGTCCCTCTTTTCCAGGGCCTTGTCTAAATGGGCTTCCAATCCTTACAAAATTGGCGGATAAGCCTGAATCTACCTCCAAATTTGATCGGGGTTGGGTATGCAGTAATACTTGGGAGTGCAGAAGGATAACTACTGCCACAATAAACAGAGGCCTGAATGTCATCCCCGATACTCTCGATAAAAATAGCGAAATTTATATTCAAAATTACGAGGCGACGGAAAAGCTTTTAGCCGAGCTTCACCAGAATATTGATAAGGTGCTGAAAGGAGGGGGTCCTAAAGCAGTAGAAAGGAACCGTGCGAGGAAGAAGCTGCTGGCTAGGGAGCGCATTGACCGTGTACTGGATCCTGGATCCTCATTCCTTGAACTGTCTCAGCTTGCAGGACATGAGTTATATGAGGAGCCGTTACCCTCTGGAGGGATTGTGACAGGAATAGGGCCCGTTAATAGGAAGTTGTGTTTGTTTGTAGCCAATGACCCTACTGTCAAAGGTGGGACTTATTATCCTATCACCATTAAGAAGCATCTTCGTGCACAAGAAATTGCTGCACAGTGCAATCTACCTTGCATATATCTTGTTGATAGTGGTGGTGTTAATCTTCCAAGACAGGCAGATGTCTTTCCTGACAAAGAACATTTTGGAAGAATATTTTACAATCAGGCACAGATGTCAGCTGCAGGAATTCCACAGATTGCTTTGGTATTAGGTTCTTGCACTGCTGGAGGGGCTTATATTCCTGCAATGGCCGATGAAAATGTTCTTGTCAAAGGCAACGGCACTATTTTTTTAGCTGGACCTCCTCTTGTCAAGGCTGCAACTGGAGAAGAAGTGTCTGCAGAGGATTTAGGAGGTGCTTCAGTGCATTGTAAAATCTCTGGAGTTTCTGATTATTATGCCAATGATGAACTGCACGCACTTGACATTGGAAGGAGAATAGTGAAAAACTTGCATATGGCTGGAAATGAGGAGAAAATCAAAGGTTGGACATGTCCTATTTCTGAAGATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGTCTGCAGATCGTAAACAGTCATTTGATGTCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGAAACAATGGCATTTTATTCACAGAATCTGCTCTAAAAGGTGCTCACTTCATACAGCTGTGTACACAGCGCCAGATTCCCTTGATATTTCTTCAGAATATCACAGGATTTATGGTTGGCTCAAGATCAGAAGCAAGCGGTATTGCCAAGGCAGGAGCGAAGATGGTGATGGCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAATTTTTTGTTTCTTTGGCCCACAGCCCGAATTTCAGTCATGGGAGGTGCCCAGGCTGCTGGAGTTCTTGCTCAAATTGAAAGGGACAATCGCAAGCGACAGGGTATTCAGTGGAGCACAGAGGAGGAAGAAGCCTTAAAAGCCAAGGTGACAGAGTCTTATGAAAGAGAAGGAAATCCATATTATGCAACTGCAAGACTCTGGGATGATGGCATTATTGATCCTGCAGATACAAGAACGGTTTTAGGTTTGGCTTTATCTGCTTCAAAACAAGACGCTTCTGTTAAAACAACATACGGTGTTTTTAGGATGTAA___GTGGAAAAGCACTGTGGTGCCAAGAAAGTTGTTGTAAGGCATCAATAAAAGTTCAAAAGTTCAAAATTTGTAAATACATTGTTTGAACTAATGGTAAATTTTCCAGCAATTCCATAAAGTTTTTCAGAAACAAATACCTTTCATGGAAAGTCTTAAGACAGTCAAAGTCGTAATATTTGTTATTTCAAAAGTACACAAATTTTCATCGAAAATTATAGTTGTGGC

Fln Alignment:

Contig3105___LNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVSAEDLGGASVHCKISGVSDYYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM
Q9LDD8______________VGILPDGVDRNSEAFSSNSIAMEGILSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCIYLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCTVSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFNESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPLEDTRFGVFRM

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1136	80			20	0.995493
1137	20			80	0.995493
1204			80	20	0.995493
1283	33		66		0.997452
1320	25			75	0.996473
1340	33			66	0.997452
1341		33	66		0.997452
1342	33	66			0.997452
1344		66		33	0.997452
1453	85			14	0.993533
1496		66		33	1.0
1505	50		50		1.0
1532	11			88	0.923564
1535			11	88	0.923564
1626		90	10		0.90298
1627	10			90	0.90298
1631	10		90		0.90298
1633	90	10			0.90298
1634	80			20	0.999996
1635	80			20	0.999996
1638		10		90	0.90298
1644	72		18	9	0.999994
1646	81	18			0.999994
1650			18	81	0.999994
1742		88		11	0.923564
1955	11	88			0.923564
2090		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain