SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3078

Length: 1406 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3078 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ankyrin repeat-containing protein n=4 Tax=Arabidopsis RepID=Q9M840_ARATH	-	-	69%
FL-Next	tr=Ankyrin repeat-containing protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	ankyrin repeat-containing protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Copper amine oxidase	IPR000269	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9M840

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 169 aas, your sequence is shorter than subject: 406 - 640

Fln protein: ALRRILSTLPRLPKAGEVTTEEESILAEQRADIVSGCIDRRDVPGRETALHVAVRLGDCTAVEMLMAAGADWSLQNEQGWNALQEAVCAREDAIAMTITRYYQPLAWAKWCRRVPRIIATAGRMRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRSDQSFLFLGEGTEDPRLSAGSLIVLTHKEKEISNALEGAGTPPSDAEVAQEVALMAQTNLYRPGIDVTQAELVPHLNWRRQDRTEMVGPWKAKIYDMLHVMLSVKSRRVPGAMTDEELFAAENDKFADEPVGYEEMLTKEEKEQLDQALSMGNSEAIEDEGAIFSGPVDRDECHQNGGLSGSAGDPDASESSEASEANCDKDKRGWFGWSKKMTKTDGLKRTSLNSTN*

Protein Length: 407

Fln nts: GGCGCTTCGGCGGATCCTCTCAACACTGCCGAGATTGCCCAAGGCTGGAGAAGTGACCACGGAGGAGGAATCGATATTGGCAGAGCAACGGGCGGACATCGTGTCTGGTTGCATAGATCGGCGGGACGTCCCGGGGCGGGAGACGGCCCTCCATGTAGCCGTTCGGCTTGGGGATTGTACAGCCGTGGAGATGCTGATGGCTGCCGGGGCTGATTGGAGCCTCCAGAACGAGCAGGGGTGGAACGCCTTGCAGGAGGCGGTGTGCGCGCGCGAGGACGCCATCGCAATGACGATAACCAGGTATTATCAACCCCTCGCCTGGGCCAAATGGTGCCGACGCGTCCCCCGCATCATAGCCACTGCTGGGAGAATGAGAGATTTCTATATGGAAATAACTTTCCATTTTGAGAGCTCCGTTATCCCCTTCATAGGGCGCATTGCGCCGTCAGATACTTACAGGATCTGGAAGCGCGGTTCGAACCTCAGGGCTGACATGACCCTTGCAGGGTTTGATGGTTTTCGGATACAGAGGTCCGATCAGAGCTTCTTGTTCTTGGGCGAGGGCACCGAGGACCCGAGATTGTCTGCTGGATCACTTATCGTCCTTACTCACAAAGAAAAAGAAATCAGCAATGCGCTCGAGGGTGCCGGGACTCCGCCATCCGATGCGGAGGTCGCGCAAGAGGTTGCCCTGATGGCGCAGACGAATTTATATAGGCCTGGCATTGATGTTACTCAGGCTGAGCTCGTTCCTCATTTGAATTGGAGGCGGCAGGACAGGACTGAAATGGTTGGTCCCTGGAAGGCCAAGATCTATGATATGCTGCATGTGATGCTCAGTGTCAAGTCCCGGAGGGTCCCTGGGGCGATGACTGACGAGGAACTCTTTGCAGCAGAGAATGATAAGTTTGCGGATGAGCCGGTGGGTTATGAGGAGATGCTGACAAAGGAGGAGAAAGAACAGCTGGACCAAGCTCTGAGCATGGGGAATTCGGAGGCCATCGAAGATGAGGGGGCCATATTCTCTGGCCCTGTGGATCGGGATGAATGCCATCAGAATGGTGGGTTGTCGGGTTCTGCAGGGGATCCTGATGCCTCTGAGTCCTCCGAGGCCTCTGAAGCCAACTGTGATAAAGATAAGCGAGGTTGGTTTGGGTGGAGCAAGAAGATGACAAAAACCGATGGACTGAAGCGAACATCACTGAATTCAACAAATTAATAAGCTTGATAAACAGCTAGAGAAACCCCTTCCTGAATGCAATGGCAGTGGCACTTTAGTTAATGAGGATTCGACAAGGATACTGAGGAAGTTCCCTAAGTTAGCTCCAGAGAGCAGTCAGAAATCAGTCGACCACCAACCATCTGAATTTCAGAAGGATGATGCTGTAGGTAGTAGAAAGGGAAAA

Fln Alignment:

Contig3078___ALRRILSTLPRLPKAGEVTTEEESILAEQRADIVSGCIDRRDVPGRETALHVAVRLGDCTAVEMLMAAGADWSLQNEQGWNALQEAVCAREDAIAMTITRYYQPLAWAKWCRRVPRIIATAGRMRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRSDQSFLFLGEG--TEDPR--LSAGSLIVLTHKEKEISNALEGAGTPPSDAEVAQEVALMAQTNLYRPGIDVTQAELVPHLNWRRQDRTEMVGPWKAKIYDMLHVMLSVKSRRVPGAMTDEELFAAENDKFA----DEPVGYEEMLTKEEKEQLDQALSMGNSEAIEDEGAIFSGPVDRDECHQNGGLXXXXXXXXXXXXXXXXXANCDKDKRGWFGWSKKMTKTDGLK
Q9M840______________ALRRIVSDLPRLAKAGEVTTEAESMESESRADSVSAVIDRRDVPGRETPLHLAVRLRDPVSAEILMSAGADWSLQNENGWSALQEAVCTREEAIAMIIARHYQPLAWAKWCRRLPRIIASASRIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFKIQRSDQTFLFLGDGYSSEDGKMSLSPGSLIVLSHKEKEMTNALEGAGAQPTDAEVAHEVALMSQTNMYRPGIDVTQAELVSHLNWRRQERTEMVGNWKAKVYDMLHVMVSVKSRRVPGAMTDEELFAVDEERTAVTNGAETDGFEDVLTPEERLQLNSALQTGNSDAIEDE------ECEVTDQQENGAL---------------------KDKKGWFGWNKKGSNTEDTK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain