SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3072

Length: 1999 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3072
ATGGGGAACTCTGCGTGTGCAGGAATTGTATCAAAGTCACTGAACTATATTACCCGGCAAAGGGCGGGGACGAGCGGGGCACAGTGGTCTTGGTCCAAGCTATCGTAATTTTACGAAATTCGAAATGGAATGTTAATTTCGTTCGTGTGTGCTCCGGAGAGAGTGAGAAGAGGAGAGAAATGGCTGCAGGAGGAGGAAGCGGCAGAAGTGAACCAGCAATAACGACGACGGACCACAACACGGATGTTCCGGTGCATCTACAGAAGGATGATACGTATTTAGGAGAAGTCCGTGGCACAAAAATGAAATATGACATTGGCTGCTATGTACATTGTCTCTCCTCATGGGATAATGTTTATCATTTGGCGGAGATTATGGATCAACGAGAAAGTAAAGATGGAATTGAATACTATGTTCATTACAATGATCAGAACAAAAGACTTGATGAGTGGGTCTCTTTTACAAGACTTGAGGATCCAAAAACAGAAATAGGTTGTGGGTTCCAGTGTGAAATTGGGGAAAATCCTGCTCCATTGATTGCTCCAGCCACGCCAACTATAGTTGGGTCAAGTTTAGGGGACCCTAAGTTGGATGCTCCAGGTACATCAGATCGTAAGTTGACTCGCAATCTAAAGAGGCGCTATGATGAGATACACAATGTGCAAAAGGGTCTAGAGGAACTCTCACCCATTGACCAAAATCTTGAAAAGGAGCATGAAGAAAAGACTAAAGTCAAGAACATTCAGGTTGTGGAGCTTGGGAAATACGAGATTGACACATGGTATTATTCGCCATATCCTGAAGAATATTCAAATGTAGACAAGCTATATATTTGTGAATTTTGCTTGAAATATATGAAGAAGAGAATAACCTATAAGCGCCACATGATGAAATGTTGCTATCGACACCCACCAGGTAATGAGATATACAGGACTGTTGTTGCTGAGCAATCTTCAGTTCCATCTGATAATAAACAGAATGGTGAGTCAACCAGCGGACAGAGTAAACTGTCTGAAAAGGGAGGGAGCCTGCAAACCCTTTCAGTGTTTGAAGTGGACGGCCAAAACAGGAAACTCGAGAGTCAGAATCTATGCCTTCTTGCAAAACTTTTCCTTGACCACAAGACGCTTTACTATGATGTAGACTCTTTCCTGTTTTACATATTAACAGAGCTGGATAATTATGGACATCAAATAGTTGGATACTTTTCCAAGGAAAAATATTCCGTAGAATCTTACAATTTGGCATGTATTTTGACTCTTCCACCATTTCAGCGAAAAGGCTATGGGCGATTTCTCATAACACTTGCTTATGAGCTTTCTAAGAAGGAGGGGAAAATTGGAACCCCAGAGCGCCCACTCTCTGACCTTGGTCAGGTTAGCTTTAGAAGTTATTGGAGCAGAGTTCTCCTGGAAGTCCTCCGCGACCATGGAGGAAATTTGTCTATTAAGGATTTAAGTTCCATGACTGCCATTCGCAGTGATGACATTATCAACACTTTGCAGTCGCTGAACTTGATTAGGTACTACAAGGGACAACACATTATCTCTATTTCAGCGAAGGTGATTGAGGAACATATGAAGAGCACTTCAAAAACAAAGTGGTCTATTGATCCTTCAAAGCTTCATTGGACTCCACTTAGCAACCCATTAACAAGGAGAACGAGATAACACCTCTTACATATTGAATCGCGGGAGCTAAATGCACCAAGGCCATGAAACTTGTAATTCACATCCGAAATTGAGTTGTTTAGAGGCATACACAGAAGATAGGATATTACAATATCATTGAACAGATGATATTGCTAGTGTATAATCCGTAAAAGGGTGTGGATGATCTAAGGAAAATTTTGACTGAAAAAGTATACATAGGTATAGCTGCTTGAAAAATTGTACCAATTTACAAGTTTATAGAAAATATAAATAGAGGACATACATCGGAATAACGCGGTCTTTTGTATTTATTTATGTAACTGTGGATTTCTGATGTAAATTTCATG

Ace file of the UniGene sp_v2.0_unigene3072

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RAZ9_PHYPA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	histone acetyltransferase	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	65%
Blast2go	Tetracycline biosynthesis	00253	65%
Blast2go	Lysine degradation	00310	65%
Blast2go	Arginine and proline metabolism	00330	65%
Blast2go	Histidine metabolism	00340	65%
Blast2go	Tyrosine metabolism	00350	65%
Blast2go	Benzoate degradation	00362	65%
Blast2go	Lipopolysaccharide biosynthesis	00540	65%
Blast2go	Glycerophospholipid metabolism	00564	65%
Blast2go	Ether lipid metabolism	00565	65%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	65%
Blast2go	Toluene degradation	00623	65%
Blast2go	Naphthalene degradation	00626	65%
Blast2go	Aminobenzoate degradation	00627	65%
Blast2go	Ethylbenzene degradation	00642	65%
Blast2go	Butanoate metabolism	00650	65%
Blast2go	Methane metabolism	00680	65%
Blast2go	Limonene and pinene degradation	00903	65%
Blast2go	Diterpenoid biosynthesis	00904	65%
Blast2go	Carotenoid biosynthesis	00906	65%
Blast2go	Anthocyanin biosynthesis	00942	65%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	65%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	65%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	65%
Blast2go	Betalain biosynthesis	00965	65%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	65%
Blast2go	Biosynthesis of type II polyketide backbone	01056	65%
Blast2go	Biosynthesis of terpenoids and steroids	01062	65%
Blast2go	Metabolic pathways	01100	65%
Blast2go	Biosynthesis of secondary metabolites	01110	65%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	MOZ/SAS-like protein	IPR002717	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX9

Fln msg: your sequence is longer than subject: 497 - 458

Fln protein: MAAGGGSGRSEPAITTTDHNTDVPVHLQKDDTYLGEVRGTKMKYDIGCYVHCLSSWDNVYHLAEIMDQRESKDGIEYYVHYNDQNKRLDEWVSFTRLEDPKTEIGCGFQCEIGENPAPLIAPATPTIVGSSLGDPKLDAPGTSDRKLTRNLKRRYDEIHNVQKGLEELSPIDQNLEKEHEEKTKVKNIQVVELGKYEIDTWYYSPYPEEYSNVDKLYICEFCLKYMKKRITYKRHMMKCCYRHPPGNEIYRTVVAEQSSVPSDNKQNGESTSGQSKLSEKGGSLQTLSVFEVDGQNRKLESQNLCLLAKLFLDHKTLYYDVDSFLFYILTELDNYGHQIVGYFSKEKYSVESYNLACILTLPPFQRKGYGRFLITLAYELSKKEGKIGTPERPLSDLGQVSFRSYWSRVLLEVLRDHGGNLSIKDLSSMTAIRSDDIINTLQSLNLIRYYKGQHIISISAKVIEEHMKSTSKTKWSIDPSKLHWTPLSNPLTRRTR*

Protein Length: 498

Fln nts: ATGGGGAACTCTGCGTGTGCAGGAATTGTATCAAAGTCACTGAACTATATTACCCGGCAAAGGGCGGGGACGAGCGGGGCACAGTGGTCTTGGTCCAAGCTATCGTAATTTTACGAAATTCGAAATGGAATGTTAATTTCGTTCGTGTGTGCTCCGGAGAGAGTGAGAAGAGGAGAGAA_-_ATGGCTGCAGGAGGAGGAAGCGGCAGAAGTGAACCAGCAATAACGACGACGGACCACAACACGGATGTTCCGGTGCATCTACAGAAGGATGATACGTATTTAGGAGAAGTCCGTGGCACAAAAATGAAATATGACATTGGCTGCTATGTACATTGTCTCTCCTCATGGGATAATGTTTATCATTTGGCGGAGATTATGGATCAACGAGAAAGTAAAGATGGAATTGAATACTATGTTCATTACAATGATCAGAACAAAAGACTTGATGAGTGGGTCTCTTTTACAAGACTTGAGGATCCAAAAACAGAAATAGGTTGTGGGTTCCAGTGTGAAATTGGGGAAAATCCTGCTCCATTGATTGCTCCAGCCACGCCAACTATAGTTGGGTCAAGTTTAGGGGACCCTAAGTTGGATGCTCCAGGTACATCAGATCGTAAGTTGACTCGCAATCTAAAGAGGCGCTATGATGAGATACACAATGTGCAAAAGGGTCTAGAGGAACTCTCACCCATTGACCAAAATCTTGAAAAGGAGCATGAAGAAAAGACTAAAGTCAAGAACATTCAGGTTGTGGAGCTTGGGAAATACGAGATTGACACATGGTATTATTCGCCATATCCTGAAGAATATTCAAATGTAGACAAGCTATATATTTGTGAATTTTGCTTGAAATATATGAAGAAGAGAATAACCTATAAGCGCCACATGATGAAATGTTGCTATCGACACCCACCAGGTAATGAGATATACAGGACTGTTGTTGCTGAGCAATCTTCAGTTCCATCTGATAATAAACAGAATGGTGAGTCAACCAGCGGACAGAGTAAACTGTCTGAAAAGGGAGGGAGCCTGCAAACCCTTTCAGTGTTTGAAGTGGACGGCCAAAACAGGAAACTCGAGAGTCAGAATCTATGCCTTCTTGCAAAACTTTTCCTTGACCACAAGACGCTTTACTATGATGTAGACTCTTTCCTGTTTTACATATTAACAGAGCTGGATAATTATGGACATCAAATAGTTGGATACTTTTCCAAGGAAAAATATTCCGTAGAATCTTACAATTTGGCATGTATTTTGACTCTTCCACCATTTCAGCGAAAAGGCTATGGGCGATTTCTCATAACACTTGCTTATGAGCTTTCTAAGAAGGAGGGGAAAATTGGAACCCCAGAGCGCCCACTCTCTGACCTTGGTCAGGTTAGCTTTAGAAGTTATTGGAGCAGAGTTCTCCTGGAAGTCCTCCGCGACCATGGAGGAAATTTGTCTATTAAGGATTTAAGTTCCATGACTGCCATTCGCAGTGATGACATTATCAACACTTTGCAGTCGCTGAACTTGATTAGGTACTACAAGGGACAACACATTATCTCTATTTCAGCGAAGGTGATTGAGGAACATATGAAGAGCACTTCAAAAACAAAGTGGTCTATTGATCCTTCAAAGCTTCATTGGACTCCACTTAGCAACCCATTAACAAGGAGAACGAGATAA___CACCTCTTACATATTGAATCGCGGGAGCTAAATGCACCAAGGCCATGAAACTTGTAATTCACATCCGAAATTGAGTTGTTTAGAGGCATACACAGAAGATAGGATATTACAATATCATTGAACAGATGATATTGCTAGTGTATAATCCGTAAAAGGGTGTGGATGATCTAAGGAAAATTTTGACTGAAAAAGTATACATAGGTATAGCTGCTTGAAAAATTGTACCAATTTACAAGTTTATAGAAAATATAAATAGAGGACATACATCGGAATAACGCGGTCTTTTGTATTTATTTATGTAACTGTGGATTTCTGATGTAAATTTCATG

Fln Alignment:

Contig3072___GGSGRSEPAITTTDHNTDVPVHLQKDDTYLGEVRGTKMKY---DIGCYVHCLSSW-DNVYHLAEIMDQRESKDGI----EYYVHYNDQNKRLDEWVSFTRLEDPKTEIGCGFQCEIGENXXXXXXXXXXXXVGSSLGDPKLDAPGTSDRKLTRNLKRRYDEIHNVQKGLEELSPIDQNLEKEHEEKTKVKNIQVVELGKYEIDTWYYSPYPEEYSNVDKLYICEFCLKYMKKRITYKRHMMKCCYRHPPGNEIYRTVVAEQSSVPSDNKQNGESTSGQSKLSEKGGSLQTLSVFEVDGQNRKLESQNLCLLAKLFLDHKTLYYDVDSFLFYILTELDNYGHQIVGYFSKEKYSVESYNLACILTLPPFQRKGYGRFLITLAYELSKKEGKIGTPERPLSDLGQVSFRSYWSRVLLEVLRDHGGNLSIKDLSSMTAIRSDDIINTLQSLNLIRYYKGQHIISISAKVIEEHMKSTSKTKWSIDPSKLHWTP
A9NUX9______________GGVPVVPPAPTTVPVITNVKVETPSSPDH-DLVRKRKLGFLPLEVGTRVLC--KWRDGKFHPVKIIERRKLPNGTTNDYEYYVHYTEFNRRLDEWVKLEQLELDSVETDA---------------------------DEKVDDKAGS-LKMTRHQKRKIDETH--VEGNEEL---DAASLREHEEFTKVKNITKIELGRYEIETWYFSPFPAEYNSCEKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRS--------------------------------GTLSMFEVDGKKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYILCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLISFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKNNISIKELSDMTAIKAEDVLSTLQGLDLIQYRKGQHAICADPKVLDRHLKAVGRGGLEVDVCKLIWTP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
675	25	75			0.996473
677	75		25		0.996473
679	75		25		0.996473
811	75		25		0.996473
986			25	75	0.996473
1009	80		20		0.995493
1154		33		66	0.997452
1553		66	33		0.997452
1554			33	66	0.997452
1555		66	33		0.997452
1746	88			11	0.923564
1753			11	88	0.923564
1754	11		88		0.923564
1755			11	88	0.923564
1757			12	87	0.992554
1759		12	87		0.992554
1765		12		87	0.992554
1768	87			12	0.992554
1769		87	12		0.992554
1772	87	12			0.992554
1773	87			12	0.992554
1775	87	12			0.992554
1870	80			20	0.995493
1872	80		20		0.995493
1873		80	20		0.995493
1874	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain