SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3057

Length: 2540 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3057
TGCCTTGGTGGATATGTGCTTTCTAGAGAAAGCATCAAAGGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCTGTTAGCGTGAATGAATTTCTGGGGCATTCGTGGCATAAGCGTGTTGGTAATGAGACTTTAGGAGTACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGTTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAACTTGCCTTAACCCGGTAGGGAAACCTCATGCAGTGGTCTCAGAAGAAGTTCTTCGGGAGAGAAATGCAAATAAGACCGGAGAGACCTATATAGAGCTAACCTCGGTTTCTCCAGCAGGAGCTACTAAATCTGCAGCAACTGAAGATGGGTACCCTGCAACTCCTGTAACAAAGGAAAAGAAGAGAGGCATGGTTCTTCCATTTAAACCGTATACCATTTGCTTCAAGCATATCAACTATTTTGTCGACATGCCTGTGGACGTAAAGAAACAAGGCATACAAGAGGATCGGCTGCAGTTGCTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTATCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAGACTACTTTGATGGACGTATTGGCCGGGAGGAAAACAGGGGGCTACATAGAGGGCAACATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACGTTCATTCACCTCATGTAACAGTTTATGAATCCCTCGTTTATTCCGGATGGCTTCGTCTCCCGGCGGAAGTTGATTCGGAAACCAGGAAGATGTTTGTAGAGGAAGTGATGGAGCTTGTAGAGCTGACTCCTCTGAGAGGTGCTCTGGTGGGCCTTCCCGGAGTGAATGGCCTGTCTACGGAGCAGCGCAAACGGTTGACCATAGCCGTAGAGCTCGTCGCCAATCCTTCCATTATATTCATGGATGAACCAACTTCAGGATTGGATGCCCGTGCAGCAGCCATTATCATGAGAACAGTGAGGAATATCGTGGACACAGGGCGGACCATTGTTTGCACTATTCATCAACCCAGTATAGATATCTTTGAAGCCTTCGATGAGTTATTTTAATGAAACGAGGGGGGCAGTTGATCTACGCAGGGCCACTGGGTCAAAATTCCCACAAACTGGTGGAGTACCTTTCGAAAGTTGAGGGAGTCCCCCCTATAAAAGACGGGTATAACCCTGCTACGTGGATGTTGGAAGTGACCGCCATGTCCGAGGAACGCCGCCTGGGGGTCGACTTTGCTGAGATTTATCAGTCATCAGAATTGTATAAACGAAACATGGAGGTGGTAGACAATTTGAGCAAGCCCGTTGCAGGCTCAACTGATCTTCATTTCCCAACAAAATATTCTCTCCCTTCCTTCGAGCAGTGCAGGGCCTGCCTATGGAAGCAACATTTGTCTTACTGGCGGAATCCTCATTACACTGCAGTGAGATTCTTCTTCACAACTATTATCTCGCTGATGTTCGGTACTATCTGCTGGAATTTTGGACCCAAGAGGAGTAAACAGCAGGATATTCTAAACGCTATGGGATCAATGTATGCTGCTGTTCTCTTCTTGGGAGTAACCAATTCGTCCTCTGTGCAACCCGTTGTTTCGGTTGAAAGAACGGTGGTGTACCGTGAAAGGGCTGCTGGAATGTATTCGGCGCTTCCATACGCTTTTGCTCAGGTGGCAATTGAGCTCCCATATGTGCTGGTCCAAACCGCCATCTACACTTTGATCTTCTACTCCATGGCCGCCTTTGAGTGGACGGTAACCAAATTCTTATGGTATTTCTTCTTCACGTATTTCACACTCTTGTATTTCACATTCTTTGGAATGATGAACGTCGCAATCACTCCCAATCACAACGTTGCTGCTATTGCTGCTGCCCCCTTCTTTATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCCCCTGTGGTGGAGATGGTATTATTGGTTGAACCCTGTGGCCTGGTCACTGTATGGCCTTCTGACTTCTCAATATGGAAATCTGGATACAAGTTTAAGAATGACAGACGGGACGCGGCAGACGGTGAAGCATTTCCTAAGAGATTATTTTGGATACCATGAAGACTTTGTAAAAGTTGCAGGTGTCGCATTGCCGGGTTTCTGCATTCTATTTGGCTTCGTTTTCGCCCTTGGAATCAAGCATCTCAACTTCCAAAGGCGATAAACGCTGGATGATCAGTGTGGTAGCAGTACAGCGGCACCTGTATATAAGTGAAGATATTCCTTACCACAAGTACTAGAACGCCATGATAAAGCAGAGAAGCTACATTGCCCATTCATTCTGTTTTGTTCTGGTTTAAAATAAATTCATCAAATCATAAACATAACTGTGGTTCATCATGAATATAAATTCATGATGGTTTGTAATCAGGTTTCTCATTACAAGTAATATTCTTAAGTAATTTTTAAA

Ace file of the UniGene sp_v2.0_unigene3057 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative pleiotropic drug resistance protein 7 emb\|CAD59570.1\| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj\|BAD24998.1\| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj\|BAD25007.1\| PDR-like ABC transporter [Oryza sati	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	atp-binding cassette	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	80%
Blast2go	Polyamine-transporting ATPase.	EC:3.6.3.31	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	80%
Blast2go	organic phosphonate transmembrane-transporting ATPase activity	GO:0015416	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	polyamine-transporting ATPase activity	GO:0015417	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Overlapping hits, possible frame ERROR between 1176 and 1152, your sequence is longer than subject: 740 - 412

Fln protein: MYAQNAVSVNEFLGHSWHKRVGNETLGVLLLKSRGLFPYAYWYWIGVGVLLGYAVLFNILYTVTLTCLNPVGKPHAVVSEEVLRERNANKTGETYIELTSVSPAGATKSAATEDGYPATPVTKEKKRGMVLPFKPYTICFKHINYFVDMPVDVKKQGIQEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDVHSPHVTVYESLVYSGWLRLPAEVDSETRKMFVEEVMELVELTPLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIIMRTVRNIVDTGRTIVCTIHQPSIDIFEAFDxxxxxxxxxxLIYAGPLGQNSHKLVEYLSKVEGVPPIKDGYNPATWMLEVTAMSEERRLGVDFAEIYQSSELYKRNMEVVDNLSKPVAGSTDLHFPTKYSLPSFEQCRACLWKQHLSYWRNPHYTAVRFFFTTIISLMFGTICWNFGPKRSKQQDILNAMGSMYAAVLFLGVTNSSSVQPVVSVERTVVYRERAAGMYSALPYAFAQVAIELPYVLVQTAIYTLIFYSMAAFEWTVTKFLWYFFFTYFTLLYFTFFGMMNVAITPNHNVAAIAAAPFFMLWNLFSGFMIPHRMIPLWWRWYYWLNPVAWSLYGLLTSQYGNLDTSLRMTDGTRQTVKHFLRDYFGYHEDFVKVAGVALPGFCILFGFVFALGIKHLNFQRR*

Protein Length: 741

Fln nts: TGCCTTGGTGGATATGTGCTTTCTAGAGAAAGCATCAAAGGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTA_-_ATGTATGCTCAGAATGCTGTTAGCGTGAATGAATTTCTGGGGCATTCGTGGCATAAGCGTGTTGGTAATGAGACTTTAGGAGTACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGTTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAACTTGCCTTAACCCGGTAGGGAAACCTCATGCAGTGGTCTCAGAAGAAGTTCTTCGGGAGAGAAATGCAAATAAGACCGGAGAGACCTATATAGAGCTAACCTCGGTTTCTCCAGCAGGAGCTACTAAATCTGCAGCAACTGAAGATGGGTACCCTGCAACTCCTGTAACAAAGGAAAAGAAGAGAGGCATGGTTCTTCCATTTAAACCGTATACCATTTGCTTCAAGCATATCAACTATTTTGTCGACATGCCTGTGGACGTAAAGAAACAAGGCATACAAGAGGATCGGCTGCAGTTGCTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTATCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAGACTACTTTGATGGACGTATTGGCCGGGAGGAAAACAGGGGGCTACATAGAGGGCAACATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACGTTCATTCACCTCATGTAACAGTTTATGAATCCCTCGTTTATTCCGGATGGCTTCGTCTCCCGGCGGAAGTTGATTCGGAAACCAGGAAGATGTTTGTAGAGGAAGTGATGGAGCTTGTAGAGCTGACTCCTCTGAGAGGTGCTCTGGTGGGCCTTCCCGGAGTGAATGGCCTGTCTACGGAGCAGCGCAAACGGTTGACCATAGCCGTAGAGCTCGTCGCCAATCCTTCCATTATATTCATGGATGAACCAACTTCAGGATTGGATGCCCGTGCAGCAGCCATTATCATGAGAACAGTGAGGAATATCGTGGACACAGGGCGGACCATTGTTTGCACTATTCATCAACCCAGTATAGATATCTTTGAAGCCTTCGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGATCTACGCAGGGCCACTGGGTCAAAATTCCCACAAACTGGTGGAGTACCTTTCGAAAGTTGAGGGAGTCCCCCCTATAAAAGACGGGTATAACCCTGCTACGTGGATGTTGGAAGTGACCGCCATGTCCGAGGAACGCCGCCTGGGGGTCGACTTTGCTGAGATTTATCAGTCATCAGAATTGTATAAACGAAACATGGAGGTGGTAGACAATTTGAGCAAGCCCGTTGCAGGCTCAACTGATCTTCATTTCCCAACAAAATATTCTCTCCCTTCCTTCGAGCAGTGCAGGGCCTGCCTATGGAAGCAACATTTGTCTTACTGGCGGAATCCTCATTACACTGCAGTGAGATTCTTCTTCACAACTATTATCTCGCTGATGTTCGGTACTATCTGCTGGAATTTTGGACCCAAGAGGAGTAAACAGCAGGATATTCTAAACGCTATGGGATCAATGTATGCTGCTGTTCTCTTCTTGGGAGTAACCAATTCGTCCTCTGTGCAACCCGTTGTTTCGGTTGAAAGAACGGTGGTGTACCGTGAAAGGGCTGCTGGAATGTATTCGGCGCTTCCATACGCTTTTGCTCAGGTGGCAATTGAGCTCCCATATGTGCTGGTCCAAACCGCCATCTACACTTTGATCTTCTACTCCATGGCCGCCTTTGAGTGGACGGTAACCAAATTCTTATGGTATTTCTTCTTCACGTATTTCACACTCTTGTATTTCACATTCTTTGGAATGATGAACGTCGCAATCACTCCCAATCACAACGTTGCTGCTATTGCTGCTGCCCCCTTCTTTATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCCCCTGTGGTGGAGATGGTATTATTGGTTGAACCCTGTGGCCTGGTCACTGTATGGCCTTCTGACTTCTCAATATGGAAATCTGGATACAAGTTTAAGAATGACAGACGGGACGCGGCAGACGGTGAAGCATTTCCTAAGAGATTATTTTGGATACCATGAAGACTTTGTAAAAGTTGCAGGTGTCGCATTGCCGGGTTTCTGCATTCTATTTGGCTTCGTTTTCGCCCTTGGAATCAAGCATCTCAACTTCCAAAGGCGATAA___ACGCTGGATGATCAGTGTGGTAGCAGTACAGCGGCACCTGTATATAAGTGAAGATATTCCTTACCACAAGTACTAGAACGCCATGATAAAGCAGAGAAGCTACATTGCCCATTCATTCTGTTTTGTTCTGGTTTAAAATAAATTCATCAAATCATAAACATAACTGTGGTTCATCATGAATATAAATTCATGATGGTTTGTAATCAGGTTTCTCATTACAAGTAATATTCTTAAGTAATTTTTAAA

Fln Alignment:

Contig3057___MRTVRNIVDTGRTIVCTIHQPSIDIFEAFDExxxxxxxxQLIYAGPLGQNSHKLVEYLSKVEGVPPIKDGYNPATWMLEVTAMSEERRLGVDFAEIYQSSELYKRNMEVVDNLSKPVAGSTDLHFPTKYSLPSFEQCRACLWKQHLSYWRNPHYTAVRFFFTTIISLMFGTICWNFGPKRSKQQDILNAMGSMYAAVLFLGVTNSSSVQPVVSVERTVVYRERAAGMYSALPYAFAQVAIELPYVLVQTAIYTLIFYSMAAFEWTVTKXXXXXXXXXXXXXXXXXFGMMNVAITPNHNVAAIAAAPFFMLWNLFSGFMIPHRMIPLWWRWYYWLNPVAWSLYGLLTSQYGNLDTSLRMTDGTRQT--VKHFLRDYFGYHEDFVKVAGVALPGFCILFGFVFALGIKHLNFQRR
D5ACV1______________MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDExxxxxxxxQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDL-TGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
134	87		12		0.992554
197		50		50	1.0
226	55		44		1.0
394		90		10	0.90298
399		10		90	0.90298
404	10			90	0.90298
405		90	10		0.90298
408	10			90	0.90298
411			10	90	0.90298
412		10		90	0.90298
414	10			90	0.90298
415	10			90	0.90298
416	90		10		0.90298
417	90		10		0.90298
418	90			10	0.90298
420	10			90	0.90298
421		10		90	0.90298
423	10			90	0.90298
424	90	10			0.90298
425			10	90	0.90298
436	88	11			0.923564
437		11		88	0.923564
441	11		88		0.923564
444	88			11	0.923564
476	22		77		0.999999
477			77	22	0.999999
560	85	14			0.993533
561	85	14			0.993533
562		14	85		0.993533
564	83			16	0.994512
626	71	28			1.0
627	71	28			1.0
636	83	16			0.994512
637	83	16			0.994512
638	83	16			0.994512
896	85		14		0.993533
899	85		14		0.993533
1049	85			14	0.993533
1693		50		50	1.0
1705		50	50		1.0
2320	25		75		0.996473
2321	75			25	0.996473
2322	75		25		0.996473
2323		75		25	0.996473
2519	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain