SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3013

Length: 2139 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3013
CCTTGCTGCAGCTCGCAAGTAAAGACGCTCGCCTGATTCTCTGCACTTATTTTTTCAGTCGAGCTTCCCTATGGACGAGTTTTTGCCGGATGAGTACAGGCGAGGCAAGAAGGAACGTCTAGACTCGATGGACGAGTTTTTGCCGGATGATTACATGCTAGGTAAGGAGGAACGTCTAGACCCTAGACTCGGCCCGGTGATTCGAACCGCTGATCTCAATGTCTTGCCGATTCAGAGACGGCAGGAAAACAACACGGGCAAGATCTCGGGCATTGTGCTCAAAGGTGTGTTCTTCGCCATAGTGATGGCTCTGCTGCCATTTATTCACGAAGCAGAGCCCGCAGTTAATGCATTACACAAATAATCCGTCAATAACCCGCAGCTGGGATCTGATCCCCCTGCTCGTCGTCGGCCTCGCCGTTTCCTACGGCTTGATTGCTAGGCGCCCTGCTGCCGTGGCTGAGAAGGACGAGAACCAAGAACTCTCGGTCCAGGGAACGCAGGATTATGTCCAAAACATGTTCGACTTTGCGAGCGTGTTTGATGACATTAATTCCGGCGACGATGTGGTTTTGACGAAGAACCGTTCTGTGTGGCGGCCCGAGGAACCGCTGCATGTTATTGCCGACAATGAGAAGGAGAACGTGACGGAGAAACCACTTTTGTTGCCCATCAGGAGCCTCAAGCACAGCCTCTCCAATCCTCAAGCGTTTGATTTTCTTTGCGAGAAGGAGAACGCCGATGTTTCCAGTTCGACACCGGCCATGGCAGCAGCTGCACAGAGCAACTCGAAGCTCTGGAAATCGGAGGTAAGGAGAAACGATGAATTATTTTCTGTTGAATCTGGGAATTTTGAAGAGGCACTGAGTAATATTTTGGATAATGACGAGCCTATCGTTTTCCGGTCACCGATTCCATGGTCTTCCCGGCGTGATATAATAAATAATGAAACCCCCTCACCACCGGCCCCGGCCCAGGCCCCAGTCCCGGCTGCTGACAATTTATGGTCATATGACAGGAAAATTGACGATGGTGTTCCCGCTGTCTTTCCTTCTCCAATTCCCTGGTCATCCCGTCTTAACCCGAATACCGTGCCTCCAGCCGGTGAAAATAAGCCGTCAGATGACGGGAAACAGAAAATCAACGGAGAAAACCCCCAGTCTTCTGTTTTTTCAGATAAACAAGATTGCAAACCCCAAGTACCCCCTTCCAGACCGCCTCCGCCTCCGCCTCCGCCACCTCCAACTGTGCCGGAAAGGCAGCCCTCTGAGAAGAATTTTGCTACCAGATCTGTACAGACAGCTGCCTACCCCTCTCCCAGATCATCTCCATCGCCTTCTGTATCCCCTTCTCCAAGACCCAGGCCGTCGCCATCGCCATCGCCATCGCCATCACCAACTCCAAGACAAACGCACAGGCCATCGCCTTCGTCGTGCCCTTGGCTGACGCTCAGGCCATCGCCATCGCCTACTCGCCCTCGTTCTGTCAGACAGGCCGATGGAAATCCGCAATCCTCGTCTGGAATACCTCTGCATAAATTCTCCTCTCCCAGACCATCTCCATCTCCTACTCGCTCTCGTCCAGTGGTAATGCAAAATGGATCTTCTGAGAAGCAGCCCAATCCCATACAGAGAAACAATGATGAGGCTGGGCTGTCGAAGAAAGATGATTCAGCGCAGAGAAATATCAGTGAAATGTATAACCCCCCAACTCCTCTTCGACCTATCCGTGTTGCTGCAGAGGATCCACGGTTTGAGAAGCCTGAAAAGAAAGCACCTGTTCTATCCAGTCCGAATTCCCCTGCCAGTCCAGCCGTTGCAGCTAATGGTTCTGCTCATGAAAATAGATCATCTCAGAGGTATGATCCAAACCAAAGCAATGGTGATGTTTCGAGGCAGAAAAGCAGTAAGGATGTGCTGAATTCAGCTTCCTCTAATGAAATCAAACCGAAAAGAGAACCAATTGCCCCTCCTCCTCCTCCACCACCTCGTGAAGATTTGTCGGCTGATAAGAAGCCACTGGAAAATAGCTTCTCTCATAGAAGTGAGTCGAAGAGTAAAATCGGAGATGCTTCATCTGATAGAAGTGAATCAACAAGCAGAAGTAGAGGTGCTGCATCCCATTCGAGTCATTCAAGGC

Ace file of the UniGene sp_v2.0_unigene3013 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoprotein homolog [Arabidopsis thaliana]	-	-	2.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	33%
Blast2go	glyco protein	-	-	5.24369e-16	46%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9SZP6

Fln msg: STOP codon was not found. Distance to subject end: 90 aas, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 597 - 565

Fln protein: MHYTNNPSITRSWDLIPLLVVGLAVSYGLIARRPAAVAEKDENQELSVQGTQDYVQNMFDFASVFDDINSGDDVVLTKNRSVWRPEEPLHVIADNEKENVTEKPLLLPIRSLKHSLSNPQAFDFLCEKENADVSSSTPAMAAAAQSNSKLWKSEVRRNDELFSVESGNFEEALSNILDNDEPIVFRSPIPWSSRRDIINNETPSPPAPAQAPVPAADNLWSYDRKIDDGVPAVFPSPIPWSSRLNPNTVPPAGENKPSDDGKQKINGENPQSSVFSDKQDCKPQVPPSRPPPPPPPPPPTVPERQPSEKNFATRSVQTAAYPSPRSSPSPSVSPSPRPRPSPSPSPSPSPTPRQTHRPSPSSCPWLTLRPSPSPTRPRSVRQADGNPQSSSGIPLHKFSSPRPSPSPTRSRPVVMQNGSSEKQPNPIQRNNDEAGLSKKDDSAQRNISEMYNPPTPLRPIRVAAEDPRFEKPEKKAPVLSSPNSPASPAVAANGSAHENRSSQRYDPNQSNGDVSRQKSSKDVLNSASSNEIKPKREPIAPPPPPPPREDLSADKKPLENSFSHRSESKSKIGDASSDRSESTSRSRGAASHSSHSR

Protein Length: 598

Fln nts: CCTTGCTGCAGCTCGCAAGTAAAGACGCTCGCCTGATTCTCTGCACTTATTTTTTCAGTCGAGCTTCCCTATGGACGAGTTTTTGCCGGATGAGTACAGGCGAGGCAAGAAGGAACGTCTAGACTCGATGGACGAGTTTTTGCCGGATGATTACATGCTAGGTAAGGAGGAACGTCTAGACCCTAGACTCGGCCCGGTGATTCGAACCGCTGATCTCAATGTCTTGCCGATTCAGAGACGGCAGGAAAACAACACGGGCAAGATCTCGGGCATTGTGCTCAAAGGTGTGTTCTTCGCCATAGTGATGGCTCTGCTGCCATTTATTCACGAAGCAGAGCCCGCAGTTA_-_ATGCATTACACAAATAATCCGTCAATAACCCGCAGCTGGGATCTGATCCCCCTGCTCGTCGTCGGCCTCGCCGTTTCCTACGGCTTGATTGCTAGGCGCCCTGCTGCCGTGGCTGAGAAGGACGAGAACCAAGAACTCTCGGTCCAGGGAACGCAGGATTATGTCCAAAACATGTTCGACTTTGCGAGCGTGTTTGATGACATTAATTCCGGCGACGATGTGGTTTTGACGAAGAACCGTTCTGTGTGGCGGCCCGAGGAACCGCTGCATGTTATTGCCGACAATGAGAAGGAGAACGTGACGGAGAAACCACTTTTGTTGCCCATCAGGAGCCTCAAGCACAGCCTCTCCAATCCTCAAGCGTTTGATTTTCTTTGCGAGAAGGAGAACGCCGATGTTTCCAGTTCGACACCGGCCATGGCAGCAGCTGCACAGAGCAACTCGAAGCTCTGGAAATCGGAGGTAAGGAGAAACGATGAATTATTTTCTGTTGAATCTGGGAATTTTGAAGAGGCACTGAGTAATATTTTGGATAATGACGAGCCTATCGTTTTCCGGTCACCGATTCCATGGTCTTCCCGGCGTGATATAATAAATAATGAAACCCCCTCACCACCGGCCCCGGCCCAGGCCCCAGTCCCGGCTGCTGACAATTTATGGTCATATGACAGGAAAATTGACGATGGTGTTCCCGCTGTCTTTCCTTCTCCAATTCCCTGGTCATCCCGTCTTAACCCGAATACCGTGCCTCCAGCCGGTGAAAATAAGCCGTCAGATGACGGGAAACAGAAAATCAACGGAGAAAACCCCCAGTCTTCTGTTTTTTCAGATAAACAAGATTGCAAACCCCAAGTACCCCCTTCCAGACCGCCTCCGCCTCCGCCTCCGCCACCTCCAACTGTGCCGGAAAGGCAGCCCTCTGAGAAGAATTTTGCTACCAGATCTGTACAGACAGCTGCCTACCCCTCTCCCAGATCATCTCCATCGCCTTCTGTATCCCCTTCTCCAAGACCCAGGCCGTCGCCATCGCCATCGCCATCGCCATCACCAACTCCAAGACAAACGCACAGGCCATCGCCTTCGTCGTGCCCTTGGCTGACGCTCAGGCCATCGCCATCGCCTACTCGCCCTCGTTCTGTCAGACAGGCCGATGGAAATCCGCAATCCTCGTCTGGAATACCTCTGCATAAATTCTCCTCTCCCAGACCATCTCCATCTCCTACTCGCTCTCGTCCAGTGGTAATGCAAAATGGATCTTCTGAGAAGCAGCCCAATCCCATACAGAGAAACAATGATGAGGCTGGGCTGTCGAAGAAAGATGATTCAGCGCAGAGAAATATCAGTGAAATGTATAACCCCCCAACTCCTCTTCGACCTATCCGTGTTGCTGCAGAGGATCCACGGTTTGAGAAGCCTGAAAAGAAAGCACCTGTTCTATCCAGTCCGAATTCCCCTGCCAGTCCAGCCGTTGCAGCTAATGGTTCTGCTCATGAAAATAGATCATCTCAGAGGTATGATCCAAACCAAAGCAATGGTGATGTTTCGAGGCAGAAAAGCAGTAAGGATGTGCTGAATTCAGCTTCCTCTAATGAAATCAAACCGAAAAGAGAACCAATTGCCCCTCCTCCTCCTCCACCACCTCGTGAAGATTTGTCGGCTGATAAGAAGCCACTGGAAAATAGCTTCTCTCATAGAAGTGAGTCGAAGAGTAAAATCGGAGATGCTTCATCTGATAGAAGTGAATCAACAAGCAGAAGTAGAGGTGCTGCATCCCATTCGAGTCATTCAAGGC

Fln Alignment:

Contig3013___LFTKQSPQLMHYTNNPSITRSWDLIPLLVVGLAVSYGLIARRPAAVAEKDENQELSVQGTQDYVQNMFDFASVFD---DINSGDDVVLTKNRSVWRPE----EPLHVIADNEK-----------ENVTEKPLLLPIRSLKHSLSNPQAFDFLCEKENADVSSSTPAMAAAAQSNSKLWK---SEVRRNDELFSVESGNFEEALSNILDNDEPIVFRSPIPWSSR
B9SZP6______________LFPSQAPEFINQTLN---TRGWEFLHLIFVGIAVSYGLFSRRNDE-TEKDNSSNSKFDNAQSYVSRFLQVSSVFDDDADSPSKSDVSNSTSVQTWNNQYYRNEPVVVVAEEQHPAFDQEQRSTGSRIGEKPLLLPIRSLKSRVLDADGNEISKE-------SISSVSASISRTNSNLGSKRFSSKSRNGEFGGLQHQDLEE---KIKDN---VVLPSPIPWRSR

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1715			77	22	0.999999
1716		77	22		0.999999
1717	22	77			0.999999
1724	77	22			0.999999
1727			87	12	0.992554
1728		25	75		1.0
1729	12	87			0.992554
1730	25		75		1.0
1731	85			14	0.993533
1733	14		85		0.993533
1734		71		28	1.0
1735	14	85			0.993533
1739		14	85		0.993533
1741	14	85			0.993533
1743	80		20		0.995493
1744			80	20	0.995493
1747		20	80		0.995493
1749	20		80		0.995493
1750		20	80		0.995493
1831	66			33	1.0
1837	66	33			1.0
1838			66	33	1.0
1840	33	66			1.0
2090	20			80	0.995493

SSRs (tot: 3)

Start position	End position	Sequence	Length
159	172	GGA GGA GGA GGA GG	14
747	772	GATGGC GATGGC GATGGC GATGGC GA	26
903	925	GGCGGA GGCGGA GGCGGA GGCGG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain