SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2999

Length: 1298 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2999

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] gb\|AAD39610.1\|AC007454_9 F23M19.10 [Arabidopsis thaliana] gb\|AEE31688.1\| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein PPS5; Solanum tuberosum (Potato).	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: Q3LHL2

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 346 - 528

Fln protein: MFGKSFKSAKCKTTLRLAISRVKLLKNKSDLQIKHMRRDLAQLLQSGQEASARIRVEQIIREQNIMTAREFIELFCELIVARLPIIESQKNCPIDLREAISSLIFAAPRCADIPELIEIRSLFGSKYGKEFVAAAAELRPDCGVNRTVIEKLSVRTPSGEVKLKLMQEIAKEHQIDWNPADSEKELLKPPEDMLDGPSKFVGATKTTIESIKEPHQSVSRQKYEPEPQVSNQSVSGMPNNSRSSHSGVAAPYMAPSTTKISQDFASSATSSVDNVKYEKGSTSSSVSLSSANIEHGQPSQASSNTFATNNMPVGKYSSSVQSTSDRMDSRKEDLIAKSSTSSNIST

Protein Length: 347

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTGAGTAAGATTTCGAATGGGTGTCTGACTTGTTCCTATCGCTGCTGTCTTTTCCTCTCCCCTTCCCTAGTTGAGACCACCTCCAACATATAGTCCCACAAAGGCTCTACTCGACATCAATCTAATCAGCTGCCTGCTGCATAGCTTTCTCTGCCATTCACAATTCAATCCCGTCGCCATAATTTAACCGCATCTTCTGTCTTTAATCAGAGGAAGCTCTATCTGCAAGCC_-_ATGTTCGGCAAAAGTTTCAAGTCTGCAAAATGCAAGACCACTCTGAGGCTCGCGATCTCGCGCGTGAAGTTGTTAAAGAACAAGTCAGATTTGCAGATAAAGCACATGAGGAGGGATCTGGCTCAGCTTTTGCAATCCGGCCAGGAAGCAAGTGCCAGAATTCGGGTTGAACAGATAATAAGAGAACAGAATATTATGACAGCACGTGAATTTATTGAACTCTTTTGTGAACTGATTGTGGCACGGTTACCCATTATTGAATCCCAGAAGAACTGCCCTATTGATTTGCGGGAAGCAATATCAAGTTTGATATTTGCAGCTCCAAGATGTGCTGACATTCCAGAACTTATAGAAATTCGCAGCCTCTTTGGGTCAAAATATGGTAAAGAATTTGTAGCTGCAGCAGCTGAGTTGCGCCCAGATTGTGGTGTAAACAGAACGGTTATTGAAAAACTATCTGTGAGAACCCCTAGTGGGGAAGTAAAGCTGAAGCTCATGCAAGAAATAGCCAAGGAGCACCAAATTGATTGGAATCCAGCGGACTCTGAAAAAGAACTTTTGAAACCCCCTGAAGACATGCTTGATGGCCCAAGTAAATTTGTTGGTGCTACCAAGACGACTATAGAATCTATCAAGGAACCCCATCAGTCTGTTTCTCGGCAGAAATATGAACCTGAGCCCCAGGTTTCTAATCAAAGTGTAAGTGGAATGCCTAACAATTCTAGAAGTTCTCACTCTGGAGTTGCTGCACCTTACATGGCCCCTTCAACGACTAAAATTTCCCAGGACTTCGCATCTTCGGCCACATCATCTGTTGACAATGTAAAATATGAGAAAGGAAGCACAAGCTCATCCGTTTCACTTTCTAGTGCCAATATTGAGCATGGACAACCATCTCAAGCTTCCTCAAATACCTTTGCCACAAATAATATGCCTGTTGGCAAATATTCTTCATCTGTGCAGTCAACCTCTGATAGAATGGACAGTAGAAAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATATATCCACATT

Fln Alignment:

Contig2999___LQAMFGKSFKSAKCKTTLRLAISRVKLLKNKSDLQIKHMRRDLAQLLQSGQEASARIRVEQIIREQNIMTAREFIELFCELIVARLPIIESQKNCPIDLREAISSLIFAAPRCADIPELIEIRSLFGSKYGKEFVAAAAELRPDCGVNRTVIEKLSVRTPSGEVKLKLMQEIAKEHQIDWNPADSEKELLKPPEDMLDGPSKFVGATKTTI--ESIKEPHQSVSRQKYEPEPQVSNQSVSGMP----NNSRSSHSGVAAPYMAPSTTKISQDFASSATSSVD
Q3LHL2______________MDSFFSKGFKAAKCKTMLKLTIPRIKLLRNRREFQLKQMRKEIAKLLETGQEATARIRVEHIIREEKMMAAQEIVELFCELISVRLPIIEAQRECPLDLKEAISSVCFAAPRCADLPELLQVQMMFAGKYGKEFIAAATELMPECGVNRQLIELLSIRAPAPDVKMKLLKEIAEEHQLDWDPSASETELLKSHEDLLNGPTQFVSGAKVPLPKERLDEVQHSASDQVFDKQTESEADFDLDFPEVPKQPLRHSTGGVSAPEMLP--------FPASALSDSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1008	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain