SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2990

Length: 1673 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2990

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=35 Tax=Magnoliophyta RepID=NU4M_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nadh dehydrogenase subunit 4	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	88%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	88%
Blast2go	respiratory chain	GO:0070469	Cellular Component	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	mitochondrial membrane	GO:0031966	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT08

Fln msg: your sequence is longer than subject: 175 - 57

Fln protein: MLLPFRECYFDLSGLILCPVLGSIILLFIPNSRIRLIRFIGLCASLLTFLYSLVLWIQFDSSTAEFQFVGTIRWLPYENINLYMGIDGISLFFVVLTTFLIPICILVGWSSTESYGKEYVIVFLICEFLMIAVFCMLDLLLFYVFFESVLIPMLCGAEHLIFAGVPTLCRSLVQ*

Protein Length: 176

Fln nts: CGTCGTGACCTTGGCTGTCACTGGTTCATGATTGGATTCGATAGCGTAATTACGTATGGGAACGAATGAATGCATAATGACATATGCCCATATATGCATTCACTCTCTATCGATCGAATCTGGTATGACACATATCTCATTCATTCATGCATAATGACATATGCCCATATATGCATTGTCTGCTAAAGCGAAATGACATATATCGAGTCATGCCGTAATTACTGCTATAATTCATGAATGCATAATGACATATGCCCATAGGAGCGTTGTCCGCTAAAGTGTAATTACGGCAGAAATGCATAATGACATATGCCCATAGCAGCTTCGGGCAGGGGAGATGGAGCAGGAGGGAGGACATATTGATAAGGGACAGGGTGGGTATGAGTTCCCGGAAAAGCCTTCCCTCTTCTTCCCCTTATCAACGGTGTTCAGCTGACTTGCACTGATAGACTCTTATTGAAACTAGGCGCCTCATCTTTCTCTATTGCCAACTAATCCCTTCAATGTTCAATTCGT_-_ATGTTACTACCTTTTCGTGAATGCTATTTTGATCTAAGTGGTCTTATTCTGTGTCCCGTGCTGGGGAGCATTATTCTTCTTTTCATTCCAAATTCAAGAATACGACTGATACGATTTATTGGTCTGTGCGCCTCTCTTCTCACTTTCTTGTACTCTCTTGTTCTCTGGATACAATTTGATTCTTCTACGGCCGAATTCCAATTTGTGGGAACCATTCGATGGCTTCCTTATGAAAACATCAATTTGTATATGGGTATAGATGGTATCTCCTTATTCTTTGTGGTATTGACCACATTTTTAATCCCTATTTGCATTTTAGTAGGTTGGTCCAGTACGGAAAGTTATGGGAAAGAGTATGTTATAGTATTTCTAATTTGCGAATTTCTCATGATTGCCGTGTTTTGCATGCTGGATCTTTTACTATTTTATGTTTTTTTCGAAAGCGTGCTAATCCCTATGTTGTGCGGAGCTGAGCATCTTATATTCGCTGGGGTACCCACCCTCTGCAGGAGCCTTGTGCAGTAA___ACCCCCTACGGGCGGATCGTCCGTCGTCGTCAAATTGAGTAGTCCCCGCGAAGCTCTCGGGAAGAAGGGTAGTCTTGTGTGTAGGCATAGCATTTCCGGTCGAACCCGTCAGATGACAGACATCTATCTATTTCTTGGGATCGTGGGGTACTCCGCTCCGATGGGTACCTCGCACGTCAAACCTCAACCCGCCTACTCGAGTATTGTATGGATATGCGGGAAAGGGTGCTCCTAGGTGTAGGGATTGTGCCTGGTCGCGAGAAGTCATTCCTCGTAAAGCCTGGGATGCAGATACACTTGCGCGAATTCGGGTGACGGCTACAAGGAAGGGTGGCGAGGAAGATAAAGGGAACTGTACCCGACCAGGGATGGACGTAAACTCGTAAGCTATCAATTGGGTTCACAGGGATAATCGTCCTGGTCCTCCACAAAGCGCCCGGGTTGGTTCCTTCCTCTGTCGTGCGTGGGAAGCTCTTGAGGAGGGAGTAGGATGAGTTGCTAAAACGAACGAAATGGAGGATCGACCCGTTATGATTACGAAGACAGACTGTTGCATTGGCTGGCCAGCCGAGGGGGGCTCGGTATATCTAAATCTGAGCAAGACAAAAAGAATAGATTGGTTCGATAAGAGG

Fln Alignment:

Contig2990___MLLPFRECYFDLSGLILCPVLGSIILLFIPNSRIRLIRFIGLCASLL
A9NT08______________MLLPFRECYSDLSGPILCPVLGSIIPLSIPNSRIRLIRFIGLCASIL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
530	11			88	0.923564
531	11			88	0.923564
532		88		11	0.923564
600		55		33	1.0
633		20		80	0.999996
663		88		11	0.923564
732	12			87	0.992554
737			87	12	0.992554
741	14			85	0.993533
743	14	85			0.993533
753	14	85			0.993533
756		85	14		0.993533
757	71			14	0.984337
854	14		85		0.993533
870	85		14		0.993533
879		14		85	0.993533
881			85	14	0.993533
1109			66	33	0.997452
1110			66	33	0.997452
1177	33			66	0.997452
1222	75		25		0.996473
1223	75		25		0.996473
1224		75	25		0.996473
1240		75		25	0.996473
1243	20		80		0.995493
1245	80		20		0.995493
1246			20	80	0.995493
1247			20	80	0.995493
1583	90	10			0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain