SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2987

Length: 2294 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2987
ATGGGGAGCCTATATCTAGCTCTTTATCTCCAACGCTGAGGGAAGGTTCTGTAAATTCAGTGTGTAGACTCCCAGCTTGATGGCCGATGGCAAGAAAAAAATGGAAGAGAGAGGAGGCGGGGGGCTGGTGCAGCTTCCTGTGTGCATCCTACAGAGCATACTGAGCAAGCTCGATGTCCCCTCCATATGCTCAGCTGCCCGATCCTGCAAACTCTTGAGTCTGTGTGCATCCCACACTCTTTCAATCGTGGACTCTTTTCATCTCCTGGATCTTCCACCAACATCTGAAATGTTGCATCATTTACTTCCTCCCAATCTGGCACTTAAAAGTCTGAAAGTAGACTGTGCCCAACTTGGTGATTCATCCATTGGACATCTTGCCAACCCTCAACTGGAGGAGCTTTGTCTTCGGTGCTGTGACAATTTTACTGCTGAACTTTTATTTGAAATTGGAAGAAATTGCAAAAACCTACGATCATTGTCCCTGGAATTGGGTTGGCTCGATGAACGAGAGGACAGACCTAGGACTTTCATCCATAATGCTGGCCTTGAACAGTTGCTCAGAGGCTGCTCTCAGTTAGAATCTCTTTGCTTGACGTTTGATGGATCTTCATTTGATAATAGCAAGTTTGCTGCGATTTGGAGGTTGGCTGCACCAACCCTAAAAGTTCTGGAACTTGGCTACATACTAGCAGCAGATGCAAAAGAAATATTTAATTCCAAGATTTTAAGCTCGGGGGGCAACATTTTTGGTCACTCTACCCTTCAAATGCAAGAGCCTAAGAGCGTTGCTTTTCCAAACTTACAAAAGTTGTGTCTGGTTTTAGACTGGATCTCAGATTCGGTGGTAGGTGTTATTTCCAAAAATCTACCCTTCCTTATTCACCTTGACCTTCGAGATGAACCTATTGAAGAACCTCGTGCAGCTATGGACTTGACAAACTGGGGTATGCAACAAATCAGTAGTTGTTCAAAATTGCAGCATCTTTCATTGGTTCGTAGTCAAGAGGATTTTGCTATATCTTTTAGAAGGGTTAATGATCTTGGGATTCTTCTAATGGCTGAAAACTGCCCAAATCTGGAAAGTGTTAGACTTGGTGGTTTCTGCCGTATCACAGATGCAGGTTTTCGGGCTATTCTGCACCGATGTTCCAATTTGCAAAAGCTTGAGTTATTGCGCACAACTCAGCTAACGGATCTAGTATTTCATGATATTTCTGCAACTCCTCTCTCTCTAACTGATGTAAGCTTGATTTCTTGCACTTTGATTACTGACTTTTCCATTATACATTTGGCATACTGTAAGGACATACAAGTACTAGATTTGAAGGGTTGCAGGCGTGTTGGAGATGATGGATTGAAGGTTGTGTCATCACTTGGAAAATTAAAAACATTGCACTTGAATAGTTCAGATATCAGTGATGTTGGCTTATCCTATTTAGGAAGTGGCAATGCACCATTGGTATCACTTTCCTTAAGAAGCTGTCAAAGGTTAACTGACAAGGGAATATCTGCTTTAGTTGCAGGTTCCCTTGTTCAAACATTGCAAAATCTTGACTTGTCAAATATTCCAAACTTAACTGACAATGCAATTCTAGTTTTAGTCAAAAGTGGAATGCAGATTGTGGAACTTCGACTCCGGGAATGCCCTCTTATTGGTGATACATCTGTCATTGCTTTGGCATCAATGCATTTCCAAGGTCGAGGATATGGAAGCACACTAAGATTATTGGATATATATAATAGTGGTGGTATTACAAAACTTGCAATTTCATGGTTTAAAAAGCCTTATTTTTCAAGGTTGCGATGGTTAGGGATAGGATCGAATGTGAATGGATATATGGATGTTCTTGGAAGAAACCGGCCATTATTGCGAATATTATGGCAAGGAAATGAGTTGGATAGGGGTCGGCAGGACTTCTCAGATGAATTTTACAAGGTTGAGTTTGAGGAAGAAGATGAGCTTGAACAGTGGTTGCAAAATTTAGGCAATGAGGGTGAAGTTGAAGATGAAATTGGACAATGGATACAGGAAGGTGAGTAAGTATATCTGCTTTTTCTAACAGTTATTTCTGCTTGTAACAGAAATATCAATTTTATTGCACATTTATGATCTTACAAGACATTTGATCTCCAATAGCATTCAATTGTATGACAATTGTACCTATAAGTCACCATTAGTATCTTCTAGTGGTGGTCATTAGATTGAATATCATGTTTTGATTTTGCAACGTTGCAGATTTCAGTTCATCATTATTCCTTTATCAGCTGGAAACAGTCCTCAGATCTGTCAA

Ace file of the UniGene sp_v2.0_unigene2987 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	f-box family protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	64%
Blast2go	ligase activity	GO:0016874	Molecular Function	64%
Blast2go	plastid	GO:0009536	Cellular Component	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV99

Fln msg: your sequence is longer than subject: 655 - 584

Fln protein: MADGKKKMEERGGGGLVQLPVCILQSILSKLDVPSICSAARSCKLLSLCASHTLSIVDSFHLLDLPPTSEMLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTAELLFEIGRNCKNLRSLSLELGWLDEREDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLAAPTLKVLELGYILAADAKEIFNSKILSSGGNIFGHSTLQMQEPKSVAFPNLQKLCLVLDWISDSVVGVISKNLPFLIHLDLRDEPIEEPRAAMDLTNWGMQQISSCSKLQHLSLVRSQEDFAISFRRVNDLGILLMAENCPNLESVRLGGFCRITDAGFRAILHRCSNLQKLELLRTTQLTDLVFHDISATPLSLTDVSLISCTLITDFSIIHLAYCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKTLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYMDVLGRNRPLLRILWQGNELDRGRQDFSDEFYKVEFEEEDELEQWLQNLGNEGEVEDEIGQWIQEGE*

Protein Length: 656

Fln nts: ATGGGGAGCCTATATCTAGCTCTTTATCTCCAACGCTGAGGGAAGGTTCTGTAAATTCAGTGTGTAGACTCCCAGCTTG_-_ATGGCCGATGGCAAGAAAAAAATGGAAGAGAGAGGAGGCGGGGGGCTGGTGCAGCTTCCTGTGTGCATCCTACAGAGCATACTGAGCAAGCTCGATGTCCCCTCCATATGCTCAGCTGCCCGATCCTGCAAACTCTTGAGTCTGTGTGCATCCCACACTCTTTCAATCGTGGACTCTTTTCATCTCCTGGATCTTCCACCAACATCTGAAATGTTGCATCATTTACTTCCTCCCAATCTGGCACTTAAAAGTCTGAAAGTAGACTGTGCCCAACTTGGTGATTCATCCATTGGACATCTTGCCAACCCTCAACTGGAGGAGCTTTGTCTTCGGTGCTGTGACAATTTTACTGCTGAACTTTTATTTGAAATTGGAAGAAATTGCAAAAACCTACGATCATTGTCCCTGGAATTGGGTTGGCTCGATGAACGAGAGGACAGACCTAGGACTTTCATCCATAATGCTGGCCTTGAACAGTTGCTCAGAGGCTGCTCTCAGTTAGAATCTCTTTGCTTGACGTTTGATGGATCTTCATTTGATAATAGCAAGTTTGCTGCGATTTGGAGGTTGGCTGCACCAACCCTAAAAGTTCTGGAACTTGGCTACATACTAGCAGCAGATGCAAAAGAAATATTTAATTCCAAGATTTTAAGCTCGGGGGGCAACATTTTTGGTCACTCTACCCTTCAAATGCAAGAGCCTAAGAGCGTTGCTTTTCCAAACTTACAAAAGTTGTGTCTGGTTTTAGACTGGATCTCAGATTCGGTGGTAGGTGTTATTTCCAAAAATCTACCCTTCCTTATTCACCTTGACCTTCGAGATGAACCTATTGAAGAACCTCGTGCAGCTATGGACTTGACAAACTGGGGTATGCAACAAATCAGTAGTTGTTCAAAATTGCAGCATCTTTCATTGGTTCGTAGTCAAGAGGATTTTGCTATATCTTTTAGAAGGGTTAATGATCTTGGGATTCTTCTAATGGCTGAAAACTGCCCAAATCTGGAAAGTGTTAGACTTGGTGGTTTCTGCCGTATCACAGATGCAGGTTTTCGGGCTATTCTGCACCGATGTTCCAATTTGCAAAAGCTTGAGTTATTGCGCACAACTCAGCTAACGGATCTAGTATTTCATGATATTTCTGCAACTCCTCTCTCTCTAACTGATGTAAGCTTGATTTCTTGCACTTTGATTACTGACTTTTCCATTATACATTTGGCATACTGTAAGGACATACAAGTACTAGATTTGAAGGGTTGCAGGCGTGTTGGAGATGATGGATTGAAGGTTGTGTCATCACTTGGAAAATTAAAAACATTGCACTTGAATAGTTCAGATATCAGTGATGTTGGCTTATCCTATTTAGGAAGTGGCAATGCACCATTGGTATCACTTTCCTTAAGAAGCTGTCAAAGGTTAACTGACAAGGGAATATCTGCTTTAGTTGCAGGTTCCCTTGTTCAAACATTGCAAAATCTTGACTTGTCAAATATTCCAAACTTAACTGACAATGCAATTCTAGTTTTAGTCAAAAGTGGAATGCAGATTGTGGAACTTCGACTCCGGGAATGCCCTCTTATTGGTGATACATCTGTCATTGCTTTGGCATCAATGCATTTCCAAGGTCGAGGATATGGAAGCACACTAAGATTATTGGATATATATAATAGTGGTGGTATTACAAAACTTGCAATTTCATGGTTTAAAAAGCCTTATTTTTCAAGGTTGCGATGGTTAGGGATAGGATCGAATGTGAATGGATATATGGATGTTCTTGGAAGAAACCGGCCATTATTGCGAATATTATGGCAAGGAAATGAGTTGGATAGGGGTCGGCAGGACTTCTCAGATGAATTTTACAAGGTTGAGTTTGAGGAAGAAGATGAGCTTGAACAGTGGTTGCAAAATTTAGGCAATGAGGGTGAAGTTGAAGATGAAATTGGACAATGGATACAGGAAGGTGAGTAA___GTATATCTGCTTTTTCTAACAGTTATTTCTGCTTGTAACAGAAATATCAATTTTATTGCACATTTATGATCTTACAAGACATTTGATCTCCAATAGCATTCAATTGTATGACAATTGTACCTATAAGTCACCATTAGTATCTTCTAGTGGTGGTCATTAGATTGAATATCATGTTTTGATTTTGCAACGTTGCAGATTTCAGTTCATCATTATTCCTTTATCAGCTGGAAACAGTCCTCAGATCTGTCAA

Fln Alignment:

Contig2987___MLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTAELLFEIGRNCKNLRSLSLELGWLDEREDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLAAPTLKVLELGYILAADAKEIFNSKILSSGGNIFGHSTLQMQEPKSVAFPNLQKLCLVLDWISDSVVGVISKNLPFLIHLDLRDEPIEEPRAAMDLTNWGMQQISSCSKLQHLSLVRSQEDFAISFRRVNDLGILLMAENCPNLESVRLGGFCRITDAGFRAILHRCSNLQKLELLRTTQLTDLVFHDISATPLSLTDVSLISCTLITDFSIIHLAYCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKTLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYMDVLGRNRPLLRILWQGNELDRGRQDFSXXXXXXXXXXXXXXEQWLQNLGNEGEVEDEIGQWIQEGE
A9NV99______________MLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTADLLFEIGRNCKNLRSLSLELGWLDEPEDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLVAPTLKVLELGYILATDAKEIFNSKIFSPGGNIFGHSTLQMQEQKSTAFPNLQKLCLVLDWISDSVVGVISKNLPFLIELDLRDEPIEEPRAAVDLTNWGIQQISSCSKLRHLSLVRSQEDFAISFRRVNDLGILLMAENCSNLESIRLGGFCRITDASFRAILHRCSNLQKLELLRMTQLTDLVFHDISATPLSLTDVSLISCSLITDFSIIHLAHCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKLLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYVDVLGRDRPLLRILWQGNELDRGRQDFSDEFYKVEFEEEDELEQWLQNLGNEGEVEEEIGQWIQEGE

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
981		10		90	0.90298
1019			90	10	0.90298
1067	88			11	0.923564
1071		11	88		0.923564
1072	11			88	0.923564
1076	88	11			0.923564
1081			11	88	0.923564
1082	88		11		0.923564
1086		11		88	0.923564
1094			10	90	0.90298
1216			90	10	0.90298
1263		88		11	0.923564
1264			11	88	0.923564
1265	11			88	0.923564
1266		88	11		0.923564
1268	88		11		0.923564
1270	77	11			0.968132
1273	88	11			0.923564
1274		11		88	0.923564
1276	11	11		77	0.968132
1277	88		11		0.923564
1281	88	11			0.923564
1282	88		11		0.923564
1284		11		88	0.923564
1285		88	11		0.923564
1306	87			12	0.992554
1307	87		12		0.992554
1308	87		12		0.992554
1314	12			87	0.992554
1317	85	14			0.993533
1319	14			85	0.993533
1320			14	85	0.993533
1321			14	85	0.993533
1323		14	85		0.993533
1327	85		14		0.993533
1330			14	85	0.993533
1436	83		16		0.994512
1450	12	87			0.992554
1454	87			12	0.992554
1588		87	12		0.992554
1589	12			87	0.992554
1590			12	87	0.992554
1592			12	87	0.992554
1593	12		87		0.992554
1596		12		87	0.992554
1598	12			87	0.992554
1599	12		87		0.992554
1600		87	12		0.992554
1604	12			87	0.992554
1605	87	12			0.992554
1609		12		87	0.992554
1929	11		88		0.923564
1937	90		10		0.90298
2126	5	66	5	22	1.0
2127			16	72	1.0
2128		5		72	1.0
2129	5		72		1.0
2130	11	83	5		0.999887
2135		12		87	0.999964
2137	12			87	0.999964
2139		87	12		0.999964
2142	12			87	0.999964
2143		12	87		0.999964
2144			18	81	1.0
2146		13	86		0.999973
2233	12	87			0.992554
2237		12	87		0.992554
2245	83	16			0.994512
2246		16	83		0.994512
2247	83	16			0.994512
2250	16	83			0.994512
2252		20		80	0.995493
2253		60	20	20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain