SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2981

Length: 1149 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2981

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome b n=4 Tax=Magnoliophyta RepID=D7RMW5_9CARY	-	-	88%
FL-Next	sp=Cytochrome b6; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast.	-	-	47%
Blast2go	apocytochrome b	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	95%
Blast2go	transport	GO:0006810	Biological Process	95%
Blast2go	response to salt stress	GO:0009651	Biological Process	95%
Blast2go	cellulose microfibril organization	GO:0010215	Biological Process	95%
Blast2go	respiratory electron transport chain	GO:0022904	Biological Process	95%
Blast2go	aerobic respiration	GO:0009060	Biological Process	95%
Blast2go	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	95%
Blast2go	metal ion binding	GO:0046872	Molecular Function	95%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	95%
Blast2go	external side of plasma membrane	GO:0009897	Cellular Component	95%
Blast2go	integral to membrane	GO:0016021	Cellular Component	95%
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	95%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	95%
Blast2go	longitudinal side of cell surface	GO:0009930	Cellular Component	95%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b/b6, N-terminal	IPR005797	-	-
Sma3	Cytochrome b/b6, C-terminal	IPR005798	-	-
Sma3	Cytochrome b/b6	IPR016175	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
537	33		66		0.997452
540	66		33		0.997452
541	66		33		0.997452
549			75	25	0.996473
550			25	75	0.996473
551	75		25		0.996473
557		20	80		0.995493
558			80	20	0.995493
560	80		20		0.995493
564			20	80	0.995493
566		80		20	0.995493
567	20		80		0.995493
571		20		80	0.995493
572	20	80			0.995493
736		85		14	0.999981
737		78	7	14	0.999974
751		7		76	0.999983
755		15		84	0.999986
811		10		90	0.90298
837		12		87	0.992554
843		22		77	0.999999
855		22		77	0.999999
859		22		77	0.999999
870		22		77	0.999999
875		77		22	0.999999
887		22		77	0.999999
924		33		66	1.0
937		33		66	1.0
938		83		16	0.994512
945		33		66	1.0
946		16		83	0.994512
947		50		50	1.0
964		25		75	0.996473
977	80		20		0.995493
978	80		20		0.995493
998		75		25	0.996473
1008		50		50	1.0
1009		25		75	0.996473
1067		50		50	1.0
1068		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain