SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2966

Length: 1651 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2966 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein smg9	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Shikimate kinase	IPR000623	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Carbohydrate kinase, thermoresistant glucokinase	IPR006001	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA1

Fln msg: your sequence is longer than subject: 288 - 236

Fln protein: MMRPDGSSSISVLSGEPLSAELAHELMGIQLGVFLASVCHVLLLVTEGLHDISLWRLMLTVDMLKQGIPDPSLLNSPSAGIGAYSQSSNIVSDREERDTLQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKALSLYFNSSSFRKNGFVQYFPSRLQYNDHLDVLNEAPSQPNKDESGSQGRHIFNNSQSRSFEIPTNGSSPGEVNFYVLPLKVSDDSTKIQLESYTSMLKQLRDQVLSMPRRSFARPISERDWLRNAARIWDMVKRSPVIAEYSKTLQSSGLYRR*

Protein Length: 289

Fln nts: AGATACTGTTATCAAAGCCCGCACCCTCTCGAATAGACGCCGGTGGGACTGGAACCTCGGCCGTTAAGTTAATGAGGGCAGGAGGCGGTGGTGGTGGAGGAGGAGGTGGCGGCGATGAGGATTTGAACCCTCGTTCGCGGTTATCCCATGGTTCTCTTAATCTTCTGTCCGACTCATGGGACTTCCAACCTGATCGCCTCTTTCCTCTATTGTCAGACAATACAGATTTCACAGTTATAGGAGTCCTGGGTCCTCCTGGTGTAGGCAAGTCTACAATTCTAAATGAACTTTATGGTTTTGACGGGACTTCATCAGGGGTTCTTCCTCCTTTTCCAGTGCAGTCAGAAGAAATTAGAGCGATGGCAAGGCATTGTAGTGTTGGCATTGAACTGAGGATGTCTGTTGAGCGGTTTATTCTCCTCGACACTCAGCCTGTATTTAGTGCATCTGTTTTTGGCGGAA_-_ATGATGAGGCCTGATGGATCTTCTTCGATTTCTGTTTTAAGTGGAGAGCCATTATCAGCTGAGTTGGCTCATGAGTTAATGGGTATTCAGCTTGGCGTTTTCCTGGCTTCAGTCTGCCATGTGCTGTTGCTTGTGACAGAGGGCCTTCATGATATCAGTCTCTGGAGACTCATGCTAACGGTTGATATGCTAAAGCAGGGGATACCAGACCCATCTCTTCTGAATTCCCCTTCAGCTGGAATAGGTGCCTATTCACAAAGTTCAAATATAGTGTCTGACAGAGAGGAGCGGGACACTTTGCAGGATGATTCAACTGAGTTTTTGGCTGATCCAGTGTTCATTCACACAAAGTTGCGTGAACAGGAGTTTTCTTGGTACAATGTTTTGTGTTTGAGAAAAGCGCTTTCACTTTATTTCAATTCATCTTCTTTCAGGAAGAATGGGTTTGTTCAGTATTTTCCATCACGGCTCCAATACAATGATCATTTGGATGTGCTGAATGAAGCCCCGTCTCAACCAAATAAAGATGAGTCTGGCTCTCAAGGGCGTCATATATTCAATAACTCACAGAGCAGATCTTTTGAGATTCCGACTAATGGGTCAAGTCCTGGTGAAGTTAATTTCTACGTTCTTCCATTGAAGGTGTCAGATGATTCAACAAAGATCCAGCTTGAGAGCTATACCTCAATGCTGAAGCAACTCCGTGATCAGGTGCTTTCGATGCCACGTCGTTCCTTTGCAAGGCCAATCAGTGAGCGTGACTGGCTTCGGAATGCAGCTAGAATATGGGATATGGTAAAAAGGTCTCCGGTTATTGCTGAATATAGCAAAACACTTCAAAGTTCGGGGTTATACCGGAGGTAG___TCGTGGCAGTGCAGTCATATTGTCATTGTGCTTTGAGCTGTTTGACTTGGTCGGTCTTGCATTTATGCTCAGATGTCCAATAAATCAAGTCTGATTTCACATCTCTTAATTATGAATGTAAGGTTATGGGAAATACTGTTCTCTACTACTCTTCATTCCGAATGTGACTTGAGGTAAATCTGATCACATGAATAGAGGCCGTTAATTTGTTACTATCTATGATGATAGAAAGTTACCGAACTGGATGTTAAATTCATTCCCTCTTTCATTCTTTTAAACGAATGTGCTGCCAAGGTTTTATGCAAATAGAAAGAGTAATAATTAT

Fln Alignment:

Contig2966___ISLWRLMLTVDMLKQGIPDPSLLNSPSAGIGAYSQSSNIVSDREERDTLQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKALSLYFNSSSFRKNGFVQYFPSRLQYNDHLDVLNEAPSQPNKDESGSQGRHIFNNSQSRSFEIPTNGSSPGEVNFYVLPLKVSDDSTKIQLESYTSMLKQLRDQVLSMPRRSFARPISERDWLRNAARIWDMVKRSPVIAEYSKTLQSSGLYRR
D5AEA1______________MSLWRLMLTVDMLKQGIPDPSLLNSSSTGVGAYSQGSNMVSDREERDALQDDSTEFLADPVFIHTKLREQEFSWYNVLCLRKALSLYFNSSSFRKNGFVQYFPSRLRYDDHLDVLSEATSHSNKDENGPQGHHILNNSQSRSFEISNNGSSPGEANFYVLPLKVSDDSAKIQLESYTSMLKQLRDQVLSMPRRSFARPISERDWLRNAARIWDMVKRSPVIADYSKTLQSSGLYRR

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
562		83		16	0.999991
564			16	83	0.999991
565	83			16	0.999991
569	83		16		0.999991
570		16		83	0.999991
571		16		83	0.999991
574		83	16		0.999991
575			16	83	0.999991
580		77	22		0.999999
582		22	77		0.999999
611	85			14	0.993533
615		85	14		0.993533
619	14			85	0.993533
621	14			85	0.993533
623		14		85	0.993533
624	14		85		0.993533
627			14	85	0.993533
629	85	14			0.993533
630	14			85	0.993533
631		14		85	0.993533
634	85	14			0.993533
635			14	85	0.993533
640	16		83		0.994512
642		83		16	0.994512
644	16	83			0.994512
646	16	83			0.994512
648		16		83	0.994512
649		16		83	0.994512
650	16		83		0.994512
653	16		83		0.994512
654			87	12	0.992554
656	12	87			0.992554
657	87	12			0.992554
661			12	87	0.992554
682	12		87		0.992554
683			87	12	0.992554
684			87	12	0.992554
690	85		14		0.993533
719	14		85		0.993533
720		14	85		0.993533
722			85	14	0.993533
723		85		14	0.993533
751		16		83	0.994512
752		16		83	0.994512
754	16			83	0.994512
854	85			14	0.993533
926			12	87	0.992554
927		12		87	0.992554
1064	83			16	0.994512
1065		83	16		0.994512
1068		83	16		0.994512
1074		16	83		0.994512
1077	16		83		0.994512
1078	83		16		0.994512
1079		83	16		0.994512
1081		16	83		0.994512
1083	83	16			0.994512
1085	16	83			0.994512
1087	16		16		0.988813
1141		33		66	1.0
1366	88		11		0.923564
1370	11			88	0.923564
1373			11	88	0.923564
1374		11		88	0.923564
1375		11		88	0.923564
1379	88		11		0.923564
1380			11	88	0.923564
1382		11	88		0.923564
1383	11		11	77	0.968132
1384	77	11		11	0.968132
1388			11	77	0.968132
1389	12			87	0.992554
1393	12			87	0.992554
1395		87	12		0.992554
1396	87		12		0.992554
1397		87		12	0.992554
1400		12	87		0.992554
1403		12	87		0.992554
1417	10			90	0.90298
1420	88			11	0.923564
1449		11	88		0.923564
1451			88	11	0.923564
1452			88	11	0.923564
1480		12		87	0.992554
1482	87			12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain