SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2953

Length: 1705 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2953

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative fructokinase [Oryza sativa Japonica Group]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	pfkb-type carbohydrate kinase family protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribokinase.	EC:2.7.1.15	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose phosphate pathway	00030		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	D-ribose metabolic process	GO:0006014	Biological Process	89%
Blast2go	phosphorylation	GO:0016310	Biological Process	89%
Blast2go	ribokinase activity	GO:0004747	Molecular Function	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Ribokinase	IPR002139	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNK6

Fln msg:

Fln protein: MAMRVPANSIAPFDNNVEKSAPPLTNSSTSSFVASGRLAKVNRSASLSLTIRQRRSQGSARASVADNKEQLTGESPLVVCFGEMLIDFVPTVAGLSLSEAQAFKKAAGGAPANVAVSIARLGGSSAFIGKVGDDEFGYMLADILEKNNVNNKGMRFDAGARTALAFVTLRSDGEREFMFYRNPSADMLLDESELDVDLIREAKIFHYGSISLISDPCKSAHLAAIKIAKDAGVILSYDPNLRLPLWPSEDAARAGILSIWDSADVIKLSEQEIVFLTEGEDPCDDAVVRKLFHPDLKLLLVTEGPGGCRYYTQEFNGRVEGLKVEPVDTTGAGDAFVGGILSQLSSDLSLYQDEKRLREALKFANVCGALTVTERGAIPALPSRQAVLEALVKL*

Protein Length: 396

Fln nts: GGGTCACGTGGGACCAGGCAGGATTAGGCACATCAAGTCGTCGCACACCAAAAAATCAAACAGGATAACAAACGATGACAGATCCTACCTTTTGAATAAATTTCCTTTTCGTTTCCTAAATTCTCTCGGCGCTGCTTTTCGTTCATTATATTCATCGCCATCATATTCCTGTTCTTGTCTGTCCTATCACATTATTCAGTTAGATTGTAAGCTTGCGGCC_-_ATGGCTATGCGCGTTCCGGCAAATTCCATTGCTCCATTCGACAACAATGTCGAGAAATCTGCACCCCCGCTGACGAATTCGAGCACATCGTCATTCGTCGCATCGGGCCGCCTCGCGAAGGTTAATCGATCGGCTTCGTTGTCGCTCACTATTCGGCAACGGAGGTCTCAAGGTTCTGCAAGAGCATCAGTAGCAGACAACAAAGAGCAGCTGACAGGTGAATCACCACTTGTGGTTTGCTTTGGAGAAATGCTGATTGATTTTGTCCCAACAGTTGCCGGATTGTCATTATCTGAAGCACAGGCCTTCAAAAAGGCTGCTGGAGGTGCACCTGCTAATGTTGCTGTTAGCATAGCAAGACTAGGAGGCTCATCAGCATTTATTGGAAAGGTTGGTGATGATGAGTTTGGATATATGCTTGCTGATATCTTGGAGAAAAACAATGTAAATAATAAGGGCATGCGTTTTGATGCTGGGGCTCGAACTGCTTTGGCATTTGTGACATTAAGGAGTGATGGTGAACGTGAATTTATGTTTTACAGAAATCCAAGTGCAGATATGTTACTTGACGAATCAGAGCTTGATGTGGATCTCATCAGAGAGGCAAAAATTTTCCACTATGGTTCAATAAGCCTTATTTCAGATCCTTGCAAATCAGCACATTTGGCTGCAATCAAGATAGCAAAAGATGCTGGCGTTATTCTTTCATATGATCCTAATTTGAGGCTGCCATTATGGCCATCAGAAGATGCAGCCCGGGCGGGTATTTTGAGCATTTGGGATTCTGCAGATGTTATAAAGCTAAGTGAGCAAGAGATTGTATTTTTAACTGAAGGTGAAGATCCTTGTGATGATGCTGTTGTGCGTAAACTTTTTCACCCAGATCTCAAGCTGTTGCTCGTCACAGAAGGTCCAGGTGGTTGTCGATATTACACACAGGAGTTTAACGGGAGAGTTGAGGGTCTCAAAGTGGAGCCTGTGGATACAACGGGTGCAGGAGATGCATTTGTTGGTGGAATTCTAAGCCAGCTGTCTTCTGACCTTTCTCTGTACCAGGATGAAAAGCGACTGAGAGAAGCACTTAAGTTTGCTAATGTCTGCGGTGCATTAACAGTCACAGAGAGGGGAGCAATTCCTGCTTTGCCTAGTCGACAGGCTGTGTTGGAAGCCTTGGTAAAATTGTAG___CTTGATTTTTTATTACCAAAGATTAACCATGTTCAGTAATGCGGTTGCCTGAAACTGAAAGCTTTGTAATTTTAAAGAGCTATGTAGCTCTGAGGTGATTTTGGTATTTTGGGAATTCCATTTAAACAATTTCGAATAATTATTTTGCAATTATGATTTTTTTCTCTTATGGAATGAGCTTTCGACGTTCTCTATTTCAATGTAACGTTGTTTTTTCACGCGTATTGAGGATACAAGAGAAATACATGTCTGTTCAATTTTATCATATGGAATACGTAGTTTCCTCTTTGATTTTAGTTT

Fln Alignment:

Contig2953___SPLVVCFGEMLIDFVPTVAGLSLSEAQAFKKAAGGAPANVAVSIARLGGSSAFIGKVGDDEFGYMLADILEKNNVNNKGMRFDAGARTALAFVTLRSDGEREFMFYRNPSADMLLDESELDVDLIREAKIFHYGSISLISDPCKSAHLAAIKIAKDAGVILSYDPNLRLPLWPSEDAARAGILSIWDSADVIKLSEQEIVFLTEGEDPCDDAVVRKLFHPDLKLLLVTEGPGGCRYYTQEFNGRVEGLKVEPVDTTGAGDAFVGGIXXXXXXXXXXXXXEKRLREALKFANVCGALTVTERGAIPALPSRQAVLEALVKL
B8LNK6______________SPLVVCFGEMLIDFVPTVSGVSLAKAPAFKKAPGGAPANVAVGIARLGGSSAFMGKVGDDEFGYMLADIMKENNVEHRGMRFDPVARTALAFVTLKADGEREFMFFRNPSADMLLTESELEVDLIQQAKIFHYGSISLITEPCRSAHLAAMRIAKDTGTLLSYDPNLRLPLWSSASAAREGILSIWDEADVIKVSDEEVEFLTEGADPYDDTVARNLFHPNLKLLLVTEGDQGCRYYTKDFSGRVNGVAVQAVDTTGAGDAFVSGILSELAKDLNLLQEEKGLREALKFANACGAITVTERGAIPALPTREAVLAALTKV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
556	85		14		0.993533
870	83		16		0.994512
1219	16			83	0.994512
1608		25		75	1.0
1630	14	85			0.993533
1631	14		85		0.993533
1632		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain