SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2916

Length: 2212 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2916
CGTCGTGACCTTGGCTGTCACTCACTTCAGCAAATTTCGTACTTTTGCCATTGTTGCAGAGCTCTTCCAAGATGGGTAACAGACACCAGATGCTGTTACTTCTCTATTCTTTTCTTCTTCTTGTTGCTGTTAGAACAGAGGCCCAGGATTCCCAACCCAATATCACAGGCTACACCTGCACCAACAGCTCATCGACCTGTGGGACATATGTTTTTTATAGAGCCCAAGCTCCCGATTACCTTGATCTCCTAAATATCTCTAATTTATTCGGGGTGCAAAGAGTCCAGATAGCAACCGACAGTAACTTGTCTACTACCACCATCTCCGTAGCCGATGGGCAGTCATTGCTCATTCCTATAACGTGTGGATGCATGGGGAATTACTCGCAGGCAAATATCACCTACACAATCTTTAAGGACGATACTTATTATAGGGTTTCAACTCGGAATTTTGAGAATCTGACAACATATCAGGCTGTCGAGGTTGCAAATCCTACCCTGAACCCAACAGACCTTCAAATTGGGGTTCAAGTCATCTTCCCAATCAGATGCAAGTGCCCATCACAAGCCCAAGTGAAGAATGGGACCAAGATGCTCATCACATACACTGTGCAACCAGTAGATACTCTGTCAAGTATCGGCAAAAAGTTTGGCTCAGATCTCCAGAATTTCGAATCTCTGAACGGTATGAATTCAAACCTAACTGACTATGCTACAGTTTTGGTTCCTGTTTCTCGGAGACCTGTGCTTTCTCAACCTGTTTCGTCTTCCCCACCTCCACCTCCACCTCCACCTGCAGCTACTTCGGGAAGTAACACTACTTCGGGAGGTGGGTCGAATAAGGGTGTTGTTATTGGGGCTTCTCTGGGTGGGGCTGTTGCACTTGTTTGTGTTGCTCTGTTAGTCTTTTGTGTTCTGAGGAACAGGGGCCGGTCACATACACAAACTAGCATATCTGAAGGTCCAAAGCCGCCTTCCCCTGCGATAGAGAATACTAAAAAAATCTCATTAGTGGCATTTCAGACTTCATTGAGAAGTCATTCCTGTATTCTATTGAAGATCTCCAGAAAGCAACTCAGAATTTTAGCCCTTCGTCCAATATAGGGGGCTCTGTTTATAAGGGTACTATAGATGGTAAGGATTATGCCATAAAGATCATGAAAGGAGATATATCCCAGGAGTTAAGGCTATTGCAGAAGGTCAACCACACTAATCTGGTAAAGCTAGAGGGGTTCTGTGTCAGTTCTGAGGGTCAATCTTACTTGGTTTATGAGTATGTAGAAAATGGTTCTTTGAGTATCTGGCTTCATGATCCAGAATCTGTTCAGGACATGAGTGCCTTTGGTTGGAGCTCTTCCTCACTTCCATGGAAAATGAAACTGCAAATTGCTCTAGATGTCGCTAACGGTCTTCATTATATTCATAACCACACAACCCCTAGCGTTGTGCACAAGGATATCAAGAGTAGCAATATTCTGTTGGATGGCAAGTTCAGGGCCAAAATTGCAAATTTTGGCATGGCTAAATCTGGCATTAATGTTCTTACAAAGCACATCACCGGCACACAAGGATACATGGCTCCAGAATACCTAGCCGATGGGTTTGTTTCCCCGATGCTTGATGTGTTTGCATTTGGAGTTGTGCTTCTAGAACTGATTTCTGGCAAAGAAGCCATAGTTCGAGAAGGGGGAGTGCCATTAGCAGGAAAGGCAGGCCTACTTTGGACCCAAATAAATCCCCTTTTAGAAGCAGAAGACAGAGAAGAAAAGCTGAGAAAATGGGTTGATGGAAATCAGCAGATTGCTTATTCCATAGACATTGTTCTTGGTCTTGCAATAATAGCTGGAGCATGCGTGGAAGAAGATCCAGGAGCACGACCCACCCTGCCAGAAATAGTTTACAAGCTTTCAAATCTATTGGAGGCCTGTGCTGATGAAAATTTTGAGGTTTCAACTTCAGTTGAAGGAAGGTGATTTTCCAATTGCAGTGATCACATATGACTCAACCCAAATCAAATCTTTTCAACATCCAACTAAATAAGAGTCCATTGGCTGTTTTATCTTCTCATGCTTTATCCTCGAAGTCCTCACGTCTGAGGAAATGTTCACATTTGACTGTAATTTTATTGCTGTATATGTAATTCTTTTGTGCAACTGTAATTGCTTTTGTTGTATTCTTGGGGAGCTTTTATTACATGGATATCTCTATTATTT

Ace file of the UniGene sp_v2.0_unigene2916

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAK43919.1\|AF370600_1 putative protein kinase [Arabidopsis thaliana] gb\|AAB80675.1\| putative protein kinase [Arabidopsis thaliana] gb\|ACI49790.1\| At2g33580 [Arabidopsis thaliana] gb\|AEC08855.1\| prote	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	66%
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	66%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	66%
Blast2go	ATP binding	GO:0005524	Molecular Function	66%
Blast2go	mitochondrion	GO:0005739	Cellular Component	66%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	CDP-alcohol phosphatidyltransferase	IPR000462	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Malonyl-CoA decarboxylase	IPR007956	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Separated hits, possible frame ERROR between 722 and 1004, your sequence is longer than subject: 634 - 536

Fln protein: MGNRHQMLLLLYSFLLLVAVRTEAQDSQPNITGYTCTNSSSTCGTYVFYRAQAPDYLDLLNISNLFGVQRVQIATDSNLSTTTISVADGQSLLIPITCGCMGNYSQANITYTIFKDDTYYRVSTRNFENLTTYQAVEVANPTLNPTDLQIGVQVIFPIRCKCPSQAQVKNGTKMLITYTVQPVDTLSSIGKKFGSDLQNFESLNGMNSNLTDYATVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLISGISDFIEKSFLYSIEDLQKATQNFSPSSNIGGSVYKGTIDGKDYAIKIMKGDISQELRLLQKVNHTNLVKLEGFCVSSEGQSYLVYEYVENGSLSIWLHDPESVQDMSAFGWSSSSLPWKMKLQIALDVANGLHYIHNHTTPSVVHKDIKSSNILLDGKFRAKIANFGMAKSGINVLTKHITGTQGYMAPEYLADGFVSPMLDVFAFGVVLLELISGKEAIVREGGVPLAGKAGLLWTQINPLLEAEDREEKLRKWVDGNQQIAYSIDIVLGLAIIAGACVEEDPGARPTLPEIVYKLSNLLEACADENFEVSTSVEGR*

Protein Length: 635

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCAGCAAATTTCGTACTTTTGCCATTGTTGCAGAGCTCTTCCAAG_-_ATGGGTAACAGACACCAGATGCTGTTACTTCTCTATTCTTTTCTTCTTCTTGTTGCTGTTAGAACAGAGGCCCAGGATTCCCAACCCAATATCACAGGCTACACCTGCACCAACAGCTCATCGACCTGTGGGACATATGTTTTTTATAGAGCCCAAGCTCCCGATTACCTTGATCTCCTAAATATCTCTAATTTATTCGGGGTGCAAAGAGTCCAGATAGCAACCGACAGTAACTTGTCTACTACCACCATCTCCGTAGCCGATGGGCAGTCATTGCTCATTCCTATAACGTGTGGATGCATGGGGAATTACTCGCAGGCAAATATCACCTACACAATCTTTAAGGACGATACTTATTATAGGGTTTCAACTCGGAATTTTGAGAATCTGACAACATATCAGGCTGTCGAGGTTGCAAATCCTACCCTGAACCCAACAGACCTTCAAATTGGGGTTCAAGTCATCTTCCCAATCAGATGCAAGTGCCCATCACAAGCCCAAGTGAAGAATGGGACCAAGATGCTCATCACATACACTGTGCAACCAGTAGATACTCTGTCAAGTATCGGCAAAAAGTTTGGCTCAGATCTCCAGAATTTCGAATCTCTGAACGGTATGAATTCAAACCTAACTGACTATGCTACAGTTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTCATTAGTGGCATTTCAGACTTCATTGAGAAGTCATTCCTGTATTCTATTGAAGATCTCCAGAAAGCAACTCAGAATTTTAGCCCTTCGTCCAATATAGGGGGCTCTGTTTATAAGGGTACTATAGATGGTAAGGATTATGCCATAAAGATCATGAAAGGAGATATATCCCAGGAGTTAAGGCTATTGCAGAAGGTCAACCACACTAATCTGGTAAAGCTAGAGGGGTTCTGTGTCAGTTCTGAGGGTCAATCTTACTTGGTTTATGAGTATGTAGAAAATGGTTCTTTGAGTATCTGGCTTCATGATCCAGAATCTGTTCAGGACATGAGTGCCTTTGGTTGGAGCTCTTCCTCACTTCCATGGAAAATGAAACTGCAAATTGCTCTAGATGTCGCTAACGGTCTTCATTATATTCATAACCACACAACCCCTAGCGTTGTGCACAAGGATATCAAGAGTAGCAATATTCTGTTGGATGGCAAGTTCAGGGCCAAAATTGCAAATTTTGGCATGGCTAAATCTGGCATTAATGTTCTTACAAAGCACATCACCGGCACACAAGGATACATGGCTCCAGAATACCTAGCCGATGGGTTTGTTTCCCCGATGCTTGATGTGTTTGCATTTGGAGTTGTGCTTCTAGAACTGATTTCTGGCAAAGAAGCCATAGTTCGAGAAGGGGGAGTGCCATTAGCAGGAAAGGCAGGCCTACTTTGGACCCAAATAAATCCCCTTTTAGAAGCAGAAGACAGAGAAGAAAAGCTGAGAAAATGGGTTGATGGAAATCAGCAGATTGCTTATTCCATAGACATTGTTCTTGGTCTTGCAATAATAGCTGGAGCATGCGTGGAAGAAGATCCAGGAGCACGACCCACCCTGCCAGAAATAGTTTACAAGCTTTCAAATCTATTGGAGGCCTGTGCTGATGAAAATTTTGAGGTTTCAACTTCAGTTGAAGGAAGGTGA___TTTTCCAATTGCAGTGATCACATATGACTCAACCCAAATCAAATCTTTTCAACATCCAACTAAATAAGAGTCCATTGGCTGTTTTATCTTCTCATGCTTTATCCTCGAAGTCCTCACGTCTGAGGAAATGTTCACATTTGACTGTAATTTTATTGCTGTATATGTAATTCTTTTGTGCAACTGTAATTGCTTTTGTTGTATTCTTGGGGAGCTTTTATTACATGGATATCTCTATTATTT

Fln Alignment:

Contig2916___MGNYSQANITYTIFKDDTYYRVSTRNFENLTTYQAVEVANPTLNPTDLQIGVQVIFPIRCKCPSQAQVKNGTKMLITYTVQPVDTLSSIGKKFGSDLQNFESLNGMNSNLTDYATVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLISGISDFIEKSFLYSIEDLQKATQNFSPSSNIGGSVYKGTIDGKDYAIKIMKGDISQELRLLQKVNHTNLVKLEGFCVSSEGQSYLVYEYVENGSLSIWLHDPESVQDMSAFGWSSSSLPWKMKLQIALDVANGLHYIHNHTTPSVVHKDIKSSNILLDGKFRAKIANFGMAKSGINVLTKHITGTQGYMAPEYLADGFVSPMLDVFAFGVVLLELISGKEAIVREGGVPLAGKAGLLWTQINPLLEAEDREEKLRKWVDGNQQIAYSIDIVLGLAIIAGACVEEDPGARPTLPEIVYKLSNLLEACA---DENFEVSTSVEGR
B8LQ73______________MANYSQANVTYTIYGGDTFYLISTRKFENLTTYPAVEVTNPTLVVTNLQIGSLATIPIRCKCPSNAQVTNGTKMLITYVVHPGDTLLNISQKFGADLQNLKSLNGINSTLIPYSTLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLMTGISDCVENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIENSSLNTWLHDPESVENMSPIGWSSSSLPWKTRLQVALDVANGLQYIHEHTTPSVVHKDIKSSNILLDGNFRAKIANFGMAKSGINALTKHIMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISGKEAIVRERGVPLAGKAGLLWTQIRPLLEGEDIEGKLRKWVDRNLQNAYTMDSILGVATIARACVEEDPVARPTLPEIVYKLSNLFDACTSNPDEKIEIRTSITGR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1760	66		33		0.997452
1761	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
771	794	CCACCT CCACCT CCACCT CCACCT	24

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain