SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2889

Length: 710 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2889 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=RAN GTPase-activating protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	33%
Blast2go	nucleotide-binding oligomerization domain-containing protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	87%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Leucine-rich repeat, ribonuclease inhibitor subtype	IPR003590	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
29	25	75			0.996473
30	75			25	0.996473
31	75		25		0.996473
58	75	25			0.996473
285	75		25		0.996473
300	80			20	0.995493
301	80		20		0.995493
337	75			25	0.996473
542	50		50		1.0
569	11		88		0.923564
572		88		11	0.923564
573			88	11	0.923564
618	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain