SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2882

Length: 2823 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2882
CGTCGTGACCTTGGCTGTCACTCATTTGTTGTCAGGCCCTGCAGAACCATACCTACAAATGCTTGCAAAGGCGTTGGCACACTATTTTGAGGCTAAATTGTTGTTGCTGGATGCAACAGACTTTTCATTAAAGGTGCAAAGCAAATATGGAGGAGGTGCAGGCACTCTTTCAAAAACAATGTCTACATCTGCACTGGATCGTGTGACTGAATTACTGGGAAATTTATCAATCCTTCCTTCAAGAGAGGACTCCAAGCCCAAAGAATCAGGTTCACTTTGGAGACAGAACAGCAGTGTTGAAACAAAATCAAAGGAAGCGGGAGATTTTAATAACTTTCATAAACTCAGAAGAAACTCTGCATCGGCAGCCGACTTATCAAGGCTTGCTGCATCAGCAACAAGTTCCCAGAATCCAGGTTCTTTAAAACGGACTAGTAGTTGGGCTTTTGAAGATAAACTGCTTGTGCAATCCCTTTATAAGGTTTTAATGACCATCTCTAGGACAGGCCCTGTACTTCTGTATTTGAGAGATGTTGAGATGCTTATGTTCAGAGCGCCAAAGACATATGGGTTGTTCTGCAAAATGGTAAAGAAGCTTTCAGGACCAGTATTGGTTCTGGGTTCCAGAATGGTGGATCCATCAGACAAACAGAACTACAGAGCAGTAGATGAAAAGCTAGCATCATTATTTCCCTATAATATCGATATAAAGCCCCCAGAAGACAATGCACACCTTGTCAGCTGGAAGAGTCAGCTTGAAGAAGATTTGAAAGCTATTCAGTTTCAGGACAATAGGAACCATATATCAGAGATTCTTGCAGCAAATGATCTTGAATGTGATGATTTGGAATCCATTTGTTTTTCGGATTCGGAGCTTCTTAGTACTTATATGGAGGAAATTGTTGTGTCTGCCATTTCTCACCATCTAATGAATACGAAAAATCCAGAGTACAGAAATGGAAGATTGGTTATTTCATCTAAAAGCTTAGCGCATGGGCTGAGTATATTCCAGGTAGGCAAGGCAGAAACAAAGCTACGCTGCCAATGTTCAATGAGGATTCTTCCAAGGATCCTCGGGAGACAGGTGCTGCAAAGGCGGAGCTCACAAGTGAAGCAGCTCCATCACCAGAGAACAAAAGTGAAGCTGGGAAAACCGACAATGCCCCTGTGGGGGTTGCCACTAAGAAAGAAACCGACCCTAAGAAAGAAGGCGACGGTCCAAAGGCATCAAATCCACCTCCTCTTCCTTCTAAACTAGGAGTGGCTCCAGACAATGACTTTGAGAAACGAATTAGACCAGAGGTCATTCCTGCTGGTGAAATTGGTGTGAATTTTTCAGATATTGGAGCCTTGGACAATGTCAAAGAAGCGCTTCAAGAGCTTGTAATGTTGCCTCTTCGACGTCCAGACCTTTTCAAAGGCGGGCTTCTTAAGCCTTGCAAAGGCATCTTGCTGTTTGGTCCCCCAGGAACTGGGAAAACAATGCTTGCAAAGGCTCTCGCAACTGAGGCTGGTGCCAGTTTCATTAATGTTTCAATGTCCACCATTACGTCGAAGTGGTTTGGAGAAGATGAAAAAAATGTGAGAGCATTGTTTAGTTTGGCTGCAAAAGTGTCCCCAACTGTGATCTTCATTGATGAGGTAGACAGCATGCTGGGGCAACGGTCTAGGGTTGGAGAGCATGAGGCAATGAGAAAAATCAAGAATGAGTTTATGGCCCACTGGGATGGATTGCTGTCTAGGAATGGAGAGCGCGTTCTTGTGTTGGCTGCAACAAATAGACCTTTCGATCTTGATGAAGCTATCATCAGACGTTTTGAGCGAAGGATCATGGTAGGTCTACCTTCTGTTGAGAATAGAGAAAAAATTCTCATGACACTCCTTGCAAAAGAGAAACTTGAAGGTGGTTTTGACTTCAAGGAGCTTGCAGCCATGACTGAAGGATACAGTGGCAGTGACTTGAAGAACTTATGCACAACAGCAGCTTTCCAGCCTGTAAGAGAGTTAATAAGGAGAGAGCAAGAGAAACTAAAGGCCGGTGAAAAGGAGAATTTCGAGAAAAAGGCAGAAGAAAGTAAGTCAGGGCCCTTCAATAAGGCTGATACATCAACAAATAATGGTGCAGACAAAAATGAAAAAGAAGAGGCTGCTGAACCTATTGTCCTAAGGCCTCTGACCATGGAAGACATGAGGCAGGCAAAGAATCAGGTATCAGCAAGCTTTGCATCCGAGGGCACAATAATGAATGAGCTGCAGCAATGGAATGACTTGTATGGTGAAGGTGGTTCCAGAAAAAAGCAACAGCTATCATATTTTATGTAAGCTACTGGTTGGTTATGCCGAACTAATTCGAGTAAGAACTCTTCAGTAAACTAGTATGCTCTTGGGAGGTTCCTTCATAGTGCACATCATACTGCAGCATGAGTATTACCTATATCTGATCTTCCCAGCTTTCCAAATATTCTGCTGTTCAAAACAGAACTGTATAAAGAATCCCTTGCTAAGCCAGAGCACACGATTTGTGTCATCACTGGCTACTTTGGAAGTGGTGAATATTCCCACCAGGTGGTTAGCTCTTTGAGGTCCTTTTTAGTCTATCACTCTACAGTGAAATATGATTGCTCATTTGATGTGTTGTGTTATATTGCCTCCTCTCATTTGGTAGAACATCAGTAGGTTTTTCCAAAATATGGATCGTGCATTACATTGTATGCTTGCATGCATATTTGTGTTATGGATTATCTGTTCTCATTGGACCATAACATTGTGTCAGACTGTTAACATAGTGTCACTGTAAGGGGAAAGCTTGATGATATGTCTTTT

Ace file of the UniGene sp_v2.0_unigene2882 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRP9

Fln msg: your sequence is longer than subject: 426 - 165

Fln protein: MFNEDSSKDPRETGAAKAELTSEAAPSPENKSEAGKTDNAPVGVATKKETDPKKEGDGPKASNPPPLPSKLGVAPDNDFEKRIRPEVIPAGEIGVNFSDIGALDNVKEALQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKALATEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTVIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSRNGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILMTLLAKEKLEGGFDFKELAAMTEGYSGSDLKNLCTTAAFQPVRELIRREQEKLKAGEKENFEKKAEESKSGPFNKADTSTNNGADKNEKEEAAEPIVLRPLTMEDMRQAKNQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM*

Protein Length: 427

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTTGTCAGGCCCTGCAGAACCATACCTACAAATGCTTGCAAAGGCGTTGGCACACTATTTTGAGGCTAAATTGTTGTTGCTGGATGCAACAGACTTTTCATTAAAGGTGCAAAGCAAATATGGAGGAGGTGCAGGCACTCTTTCAAAAACAATGTCTACATCTGCACTGGATCGTGTGACTGAATTACTGGGAAATTTATCAATCCTTCCTTCAAGAGAGGACTCCAAGCCCAAAGAATCAGGTTCACTTTGGAGACAGAACAGCAGTGTTGAAACAAAATCAAAGGAAGCGGGAGATTTTAATAACTTTCATAAACTCAGAAGAAACTCTGCATCGGCAGCCGACTTATCAAGGCTTGCTGCATCAGCAACAAGTTCCCAGAATCCAGGTTCTTTAAAACGGACTAGTAGTTGGGCTTTTGAAGATAAACTGCTTGTGCAATCCCTTTATAAGGTTTTAATGACCATCTCTAGGACAGGCCCTGTACTTCTGTATTTGAGAGATGTTGAGATGCTTATGTTCAGAGCGCCAAAGACATATGGGTTGTTCTGCAAAATGGTAAAGAAGCTTTCAGGACCAGTATTGGTTCTGGGTTCCAGAATGGTGGATCCATCAGACAAACAGAACTACAGAGCAGTAGATGAAAAGCTAGCATCATTATTTCCCTATAATATCGATATAAAGCCCCCAGAAGACAATGCACACCTTGTCAGCTGGAAGAGTCAGCTTGAAGAAGATTTGAAAGCTATTCAGTTTCAGGACAATAGGAACCATATATCAGAGATTCTTGCAGCAAATGATCTTGAATGTGATGATTTGGAATCCATTTGTTTTTCGGATTCGGAGCTTCTTAGTACTTATATGGAGGAAATTGTTGTGTCTGCCATTTCTCACCATCTAATGAATACGAAAAATCCAGAGTACAGAAATGGAAGATTGGTTATTTCATCTAAAAGCTTAGCGCATGGGCTGAGTATATTCCAGGTAGGCAAGGCAGAAACAAAGCTACGCTGCCA_-_ATGTTCAATGAGGATTCTTCCAAGGATCCTCGGGAGACAGGTGCTGCAAAGGCGGAGCTCACAAGTGAAGCAGCTCCATCACCAGAGAACAAAAGTGAAGCTGGGAAAACCGACAATGCCCCTGTGGGGGTTGCCACTAAGAAAGAAACCGACCCTAAGAAAGAAGGCGACGGTCCAAAGGCATCAAATCCACCTCCTCTTCCTTCTAAACTAGGAGTGGCTCCAGACAATGACTTTGAGAAACGAATTAGACCAGAGGTCATTCCTGCTGGTGAAATTGGTGTGAATTTTTCAGATATTGGAGCCTTGGACAATGTCAAAGAAGCGCTTCAAGAGCTTGTAATGTTGCCTCTTCGACGTCCAGACCTTTTCAAAGGCGGGCTTCTTAAGCCTTGCAAAGGCATCTTGCTGTTTGGTCCCCCAGGAACTGGGAAAACAATGCTTGCAAAGGCTCTCGCAACTGAGGCTGGTGCCAGTTTCATTAATGTTTCAATGTCCACCATTACGTCGAAGTGGTTTGGAGAAGATGAAAAAAATGTGAGAGCATTGTTTAGTTTGGCTGCAAAAGTGTCCCCAACTGTGATCTTCATTGATGAGGTAGACAGCATGCTGGGGCAACGGTCTAGGGTTGGAGAGCATGAGGCAATGAGAAAAATCAAGAATGAGTTTATGGCCCACTGGGATGGATTGCTGTCTAGGAATGGAGAGCGCGTTCTTGTGTTGGCTGCAACAAATAGACCTTTCGATCTTGATGAAGCTATCATCAGACGTTTTGAGCGAAGGATCATGGTAGGTCTACCTTCTGTTGAGAATAGAGAAAAAATTCTCATGACACTCCTTGCAAAAGAGAAACTTGAAGGTGGTTTTGACTTCAAGGAGCTTGCAGCCATGACTGAAGGATACAGTGGCAGTGACTTGAAGAACTTATGCACAACAGCAGCTTTCCAGCCTGTAAGAGAGTTAATAAGGAGAGAGCAAGAGAAACTAAAGGCCGGTGAAAAGGAGAATTTCGAGAAAAAGGCAGAAGAAAGTAAGTCAGGGCCCTTCAATAAGGCTGATACATCAACAAATAATGGTGCAGACAAAAATGAAAAAGAAGAGGCTGCTGAACCTATTGTCCTAAGGCCTCTGACCATGGAAGACATGAGGCAGGCAAAGAATCAGGTATCAGCAAGCTTTGCATCCGAGGGCACAATAATGAATGAGCTGCAGCAATGGAATGACTTGTATGGTGAAGGTGGTTCCAGAAAAAAGCAACAGCTATCATATTTTATGTAA___GCTACTGGTTGGTTATGCCGAACTAATTCGAGTAAGAACTCTTCAGTAAACTAGTATGCTCTTGGGAGGTTCCTTCATAGTGCACATCATACTGCAGCATGAGTATTACCTATATCTGATCTTCCCAGCTTTCCAAATATTCTGCTGTTCAAAACAGAACTGTATAAAGAATCCCTTGCTAAGCCAGAGCACACGATTTGTGTCATCACTGGCTACTTTGGAAGTGGTGAATATTCCCACCAGGTGGTTAGCTCTTTGAGGTCCTTTTTAGTCTATCACTCTACAGTGAAATATGATTGCTCATTTGATGTGTTGTGTTATATTGCCTCCTCTCATTTGGTAGAACATCAGTAGGTTTTTCCAAAATATGGATCGTGCATTACATTGTATGCTTGCATGCATATTTGTGTTATGGATTATCTGTTCTCATTGGACCATAACATTGTGTCAGACTGTTAACATAGTGTCACTGTAAGGGGAAAGCTTGATGATATGTCTTTT

Fln Alignment:

Contig2882___MVGLPSVENREKILMTLLAKEKLEGGFDFKELAAMTEGYSGSDLKNLCTTAAFQPVRELIRREQEKLKAGEKENFEKKAEESKSGPFNKADTSTNNGADKNE--KEEAAEPIVLRPLTMEDMRQAKNQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM
C0PRP9______________MIGLPSVENREKILVTLLAKENLEEGFDFKEIATITEGYTGSDLKNLCTTAAFHPVRELIRREQEKVKAGKKENAEKKTEESKSGPLDKADTSTDNATDKKEKVKEEAAEPIVLRPLTNEDMRQAKDQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
116	80		20		0.995493
266		25	75		0.996473
302	40	60			1.0
390		11		88	0.923564
391	88	11			0.923564
392		11	88		0.923564
393	11		88		0.923564
450	87			12	0.992554
452	12			87	0.992554
453			12	87	0.992554
457	12			87	0.992554
459	87	12			0.992554
460	87	12			0.992554
461	12		87		0.992554
464			12	87	0.992554
467	12			87	0.992554
468		12		87	0.992554
471			12	87	0.992554
614		10		90	0.90298
616		90	10		0.90298
618		10		90	0.90298
619	10		90		0.90298
621			10	90	0.90298
624	10			90	0.90298
625		10		90	0.90298
626			10	90	0.90298
627	10		90		0.90298
629		88	11		0.923564
737	20		80		0.995493
819	66	33			0.997452
820	66	33			0.997452
1065	80		20		0.995493
1246		25		75	0.996473
1345	25		75		0.996473
1346	25			75	0.996473
1348			25	75	0.996473
1506		25		75	0.996473
1507		25		75	0.996473
1510		75		25	0.996473
1527		33		66	0.997452
1738	33		66		0.997452
1803	16	83			0.994512
1804	16			83	0.994512
1805	16		83		0.994512
1806	14	85			0.993533
1807	14	85			0.993533
1891		57		42	1.0
2079		12		87	0.992554
2081	12			87	0.992554
2083	12	87			0.992554
2084	12	87			0.992554
2238		20		80	0.995493
2285	80		20		0.995493
2631		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain