SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2876

Length: 1664 nt

Origin of reads: Inia v1 Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2876 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative fasciclin-like arabinogalactan protein 20 [Arabidopsis thaliana] sp\|Q9FGW0.1\|FLA20_ARATH RecName: Full=Putative fasciclin-like arabinogalactan protein 20 dbj\|BAB10524.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED94617.1\| putative fasci	-	-	1.0e-09	25%
FL-Next	sp=Putative fasciclin-like arabinogalactan protein 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Blast2go	fasciclin-like arabinogalactan protein	-	-	5.15167e-39	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FGW0

Fln msg: your sequence is shorter than subject: 401 - 424

Fln protein: MSCAEPRKINAMEYGRLILSAITVMLILWLFDGNCAYAMDESSIVHFQDKQDQEEFLQILSNMGFISLAAHLLSSQDLLVGLKGPLTLFAPTEEAFRNFNSSSDLSSDYDLLSGHFARGLFTYAHLQMLPNGTKLDTIASDGSLLVAFNPHGDGQDLIYSSAQTRIDYRPVYVNGVLVSHPDLLNDGLLTIHGVDKLFLVLESSSSIRGNNYYAPRSALPPGGTLNPGLDHPMNIIMPFMLEDAALSLRDRGYSILALAMRIKSPELLLLQNLTIFTLSDDSVFLKGGQDFTNNVRYHVVPNSRLLMADLARLPAGTRLPTLLHGQSLVVTDDKPFSVNHVGLKIPDAFTNRWIAVHEIVRPFLISSRHHHQKRGNSNDNRTHTDNKDHQSVRASQELRK*

Protein Length: 402

Fln nts: ATGGGGGCAACTTATTCATTTTCTCTGAATCTGCAGAAGCTTCATCTTATTTTCAGTTCTTTGCACTTCCTTTAAATGCTTTGAGCGGTCGCCGTGCAGAGCTGAGTTATTCTGATTTTGATTCGGTGGGATCTTGGAATATCTTGGAATATATATAACCTGTGC_-_ATGAGCTGTGCTGAACCAAGGAAGATAAATGCGATGGAGTACGGACGTTTGATTTTGTCCGCGATTACTGTAATGTTAATTTTGTGGTTGTTTGATGGGAATTGTGCGTATGCAATGGACGAATCTTCAATTGTTCACTTCCAGGATAAGCAGGATCAGGAAGAGTTCTTGCAGATTCTCAGCAACATGGGCTTCATTTCTCTGGCCGCGCATCTGCTGTCCTCCCAAGATCTTCTGGTGGGATTGAAAGGCCCACTCACTCTTTTCGCTCCCACAGAAGAAGCCTTTCGCAATTTCAATTCCTCCTCGGATCTTTCGTCAGATTATGATCTCCTTTCCGGCCATTTTGCCAGGGGCCTCTTTACCTACGCGCATCTCCAAATGCTGCCCAATGGAACCAAGCTGGACACCATTGCCTCCGACGGCAGCCTTCTCGTCGCTTTTAACCCTCACGGAGATGGCCAAGATTTGATCTATTCGTCCGCTCAGACGCGAATCGATTATCGTCCGGTGTACGTTAATGGAGTTCTTGTCTCGCATCCGGACCTCCTCAATGACGGCCTGCTAACAATCCATGGCGTGGACAAACTGTTTCTTGTTCTTGAATCGTCGTCCTCGATACGTGGCAACAATTATTACGCGCCTCGCAGTGCTCTACCGCCAGGAGGTACTCTCAACCCTGGTCTTGATCATCCGATGAATATCATAATGCCTTTCATGCTCGAAGATGCAGCGCTGAGTCTGAGAGATCGGGGTTACAGCATCCTCGCCTTGGCCATGCGCATCAAGTCGCCAGAGCTTCTGCTCCTGCAAAACCTCACCATCTTTACCCTCAGCGACGACTCCGTTTTCTTGAAAGGCGGCCAAGATTTTACAAACAATGTGAGATACCATGTGGTTCCCAACAGCAGGCTGTTGATGGCCGATCTTGCGCGTCTTCCGGCGGGTACAAGACTCCCGACTCTCCTCCACGGCCAATCGCTGGTTGTGACCGACGACAAACCCTTCTCCGTGAATCATGTGGGATTAAAGATTCCGGATGCTTTTACAAACAGATGGATAGCAGTTCACGAGATTGTTCGGCCCTTCCTGATCTCCTCGCGTCATCATCATCAGAAGCGGGGGAATTCTAACGACAACAGAACCCACACAGATAACAAGGATCATCAGAGTGTAAGAGCATCCCAAGAATTAAGGAAGTAG___CTTAGTAATCTTTAATTTTAATTCCATATCTTTCTGGTTCTTCTTAGTAATCTTTAATTTTGATTCCATATCTTTCTGGTTCTTCTTAGTAATCTTTAACTTTAATTCTATATCTTTCTGGTTCTTCTGATCATCGTCTTCTTGATATTCATATCGACGAGAATTTATCTCCAAGAAGGAAGCAGTAAATGCCTATGTATACTATTCTGCATCAAGAAACGCCACCAAGCTTGTTGTCTAATGGAACAGTTAGAATTTATGAGATAATATAATATCAATGAATGGTTCTCAGTTAC

Fln Alignment:

Contig2876___LQILSNMGFISLAAHL-LSSQDLLVGLKGPLTLFAPTEEAFRNFNXXXXXXXXXXXXSGHFARGLFTYAHLQMLPNGTKLDTIASDGSLLVAFNPHGDGQDLIYSSAQTRIDYRPVYVNGVLVSHPDLLNDGLLTIHGVDKLFLV-------LESSSSIRGNNYYAPRSALPPGGTLNP--------------GLDHPMNIIMPFMLEDAALSLRDRGYSILA--LAMRIKSPEXXXXXXXXXXXLSDDSVFLKGGQ--DFTNNVRYHVVPNSRLLMADLARLPA-GTRLPTLLHGQSLVVT-DDKPFSVNHVGLKIPDAFTNRWIAVH
Q9FGW0______________VEVLSDSGYLSMGLTLKLANQDLNLEDWQELTLFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGET-----LRNLPNGAKIPTLRSNYSLTVTNSSRFGGKTSI---------------NNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSSTGSIPIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIF--ESASRLLMSRGFVIIATFLALQLEDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVV-SQLLLWKDLQKFAKEGSILQTVLKGYEIEISLSGDILLLNGVPLIYPDLYVNDWIAVH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
324		45	54		1.0
448		18		81	0.999994
449		18	81		0.999994
483	11			88	0.923564
509		50	50		1.0
671		25	75		1.0
785		18	81		0.999994
786	81	18			0.999994
787	81	18			0.999994
789			81	18	0.999994
856		16	83		0.994512
857	83	16			0.994512
858		16	83		0.994512
859		16	83		0.994512
860	16	83			0.994512
861			83	16	0.994512
863		20	80		0.995493
864		20		80	0.995493
866	80			20	0.995493
1493	87		12		0.992554
1593	20			80	0.995493
1625	66	33			0.997452
1626	66	33			0.997452
1627		33	66		0.997452
1629	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
385	396	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain