SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2851

Length: 1866 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2851 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana] gb\|ABJ17107.1\| At5g19380 [Arabidopsis thaliana] gb\|AED92693.1\| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	crt homolog 1-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC transporter, conserved site	IPR017871	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS11

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 439 - 466

Fln protein: MALSIKFGLPSVPTLNHHNYNYNYRISPVASLRSSTLMHHDTATSHNFIKPEGCRSPVQCPNYRWQRREGGSFGVGQIVVVTRASSARIDDGSLSYSRKNLKTVIAAAITVGLAVANRVLYKLALVPLKEYPFFLAQLTTFGYVVVYFSILYFRYHAGIVTDEMLAFPKLRFVVIGALEAVGVASGMAAAVNLSGASIPILSQTFLVWQLILSVLILGRRYAVNQIFGCLLVAAGVVMAISSGASTGQLLENAGIFWPLLMIASSSFQAGASILKESVFLDAAKRLKAGSVDLFVVNSFGSGFQALFILLLLPFLSRLWGVPFYQLPSYFKDGAACFVNVGSLAKGCDGAPLLPLLFILINMGFNISLLHLVKISSALVSSLAATFSVPLSIYMFTLPLPYLGVDCTLPPGFLVGAAVLVIGLFVYNLPHAVEATKVQ*

Protein Length: 440

Fln nts: ATGGGGACGTTCAATCTTGCCCAATTTTTCATTAGCACGGTTTCCTTCTATCAGCTAGTATTACCAGTGGTTTCCTCAAATATCGTTAGTCTATATAAAACCATGGTGTTTGGATAGCGCCCGTAAGTGGATACAGTG_-_ATGGCACTCTCAATAAAATTTGGGCTCCCTTCAGTTCCAACACTCAACCATCACAATTACAATTATAATTACAGAATATCTCCTGTTGCTTCGCTCAGAAGTTCTACATTGATGCATCATGATACGGCAACATCCCACAACTTCATTAAACCTGAAGGTTGTAGGTCTCCTGTACAGTGTCCTAACTACAGATGGCAAAGAAGAGAAGGTGGAAGCTTCGGCGTAGGACAAATTGTGGTGGTTACCAGAGCCAGCAGTGCCAGGATTGATGATGGTTCTTTATCATATTCACGGAAGAATTTGAAAACCGTCATTGCAGCTGCCATTACAGTGGGTTTGGCTGTGGCCAACAGAGTGCTGTACAAATTGGCCCTCGTGCCATTAAAGGAGTACCCATTCTTCCTTGCACAGCTCACTACTTTTGGGTATGTGGTCGTTTACTTTTCCATTCTATATTTTCGGTATCATGCTGGCATTGTGACAGATGAAATGCTGGCCTTCCCTAAATTACGTTTTGTTGTGATTGGTGCTCTGGAGGCCGTTGGAGTTGCTTCAGGAATGGCAGCAGCAGTTAATCTTTCAGGGGCATCAATTCCAATACTGTCCCAGACATTTTTGGTGTGGCAACTCATTTTATCAGTCCTGATTTTAGGAAGACGCTACGCTGTGAATCAGATATTCGGCTGCTTACTTGTAGCTGCAGGTGTTGTCATGGCTATTTCAAGTGGAGCTAGTACAGGTCAATTATTGGAGAATGCAGGAATATTTTGGCCACTTTTGATGATAGCTTCATCCTCATTTCAAGCTGGCGCCTCAATTTTGAAGGAGTCAGTTTTCCTTGATGCAGCCAAGCGTCTAAAAGCAGGATCAGTGGACCTATTTGTTGTTAATTCTTTTGGATCAGGCTTCCAGGCTTTATTTATTTTGCTACTGCTCCCCTTTTTATCAAGGTTATGGGGAGTTCCATTCTACCAGCTTCCTAGTTACTTCAAAGACGGAGCAGCTTGTTTTGTAAACGTTGGATCCTTAGCAAAGGGATGTGACGGAGCTCCATTGTTGCCACTGCTTTTCATTTTGATTAACATGGGATTCAACATCTCTTTGCTACATCTTGTGAAGATTTCTTCTGCATTGGTCTCCTCTCTAGCTGCAACATTTTCAGTGCCTCTTTCAATCTATATGTTTACACTTCCTCTCCCTTATCTTGGCGTAGATTGCACTCTTCCTCCAGGATTCCTTGTGGGTGCTGCTGTTCTTGTGATTGGATTATTTGTATATAACTTGCCTCATGCTGTGGAGGCTACCAAAGTACAATAA___CATTATTTTTGGAACCTTTGGCCATTTCTATCACTCTTTTAAAGTTTCAGCTTTGGGCTGAAACCAGTTTTCGTATTTCTAGGCAGGAAATGGATTATTAAGACTTACACAAGTGTCAACTTGGGCCTAATGAAGCTTGCTGTCATTCAGTAATAACTGGAGAGGATATTGACAAAATATCGGCACACAATTCGGCTGTAATAGGAGTATGAGGAAGTGATATGTGTGCTGATACAAGTGATGTAAATGTATCATAGGGAGCTGATTACGTAATTCTAGTAGAAGATTTCTATACAAAATGAGATATTTGGGGTTTCATTTTTGCTCATAAACTGAAGTTATGATAAATTTTATAATCAAATTGCAACTACTTTTAGCTGTGTCTATCTGCATTGGTAATTAAAATGTTCC

Fln Alignment:

Contig2851___VDTVMALSIKFGLPSVPTLNHHNYNYNYRISPVASLRSSTLMHHDTATSHNFIKPEGCRSPVQC-PNYRWQRREGGSFGVGQIVVVTRASSARIDDGSLSYSRKNLKTVIAAAITVGLAVANRVLYKLALVPLKEYPFFLAQLTTFGYVVVYFSILYFRYHAGIVTDEMLAFPKLRFVVIGALEXXXXXXXXXXXVNLSGASIPILSQTFLVWQLILSVLILGRRYAVNQIFGCLLVAAGVVMAISSGASTGQLLENAGIFWPLLMIASSSFQAGASILKESVFLDAAKRLKAGSVDLFVVNSFGSGXXXXXXXXXXXXXXXLWGVPFYQLPSYFKDGAACFVNVGSLAKGCDGAPLLPLLFILINMGFNISLLHLVKISSALVSSLAATFSVPLSIYMFTLPLPYLGVDCTLPPGFLVGAAVLVIGLFVYNLP-HAVEATK
A9NS11______________MDIVMALSIKFGLPSVPTLSHHNYHYNYRRSPVAFLRSSTLLHHATATSHNFIKPEGCRPPVQCLSNCRRLRRQGGSHVGRQIMVATRASGVRIDDGSLSYSQKNLKILIAAAVTVGLAVANRVLYKLALVPLKEYPFFLAQLTTFGYVVVYFSILYFRYHAGIVTDEMLAFPKLRFVVIGALEALGVASGMAAAVNLSGASIPILSQTFLVWQLILSVLILERRYTGNQIFGCLLVAAGVIMAIASGASTGQLLENSGNFWPLLMIASSSFQAGASILKESVFLDAAKRLKAGSVDLFVVNSFGSGFQALFVLLLLPFLSKLKGIPLNQLPSYFRDGAACFINMGSIS-DCAGAPLLPLLFIIMNMCFNISLLRLVKMSSAVVASLSITLSVPLSIFMFTLPLPYLAAESRLTPTFILGATILVLGLVMYNFPKNAKDALK

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
416			11	88	0.923564
422	11			88	0.923564
423			11	88	0.923564
424		11		88	0.923564
425		11	88		0.923564
426	11		88		0.923564
427	11			88	0.923564
428	88		11		0.923564
430		88		11	0.923564
432	11			88	0.923564
559	91	8			0.999766
596		90	9		0.999842
611		85	9	4	0.999726
612			9	90	0.999872
617	90	9			0.999872
621			10	90	0.999898
624	90	10			0.999898
625	10		90		0.999898
627	90		10		0.999898
629	90	10			0.999898
646	5			82	0.999919
649		5	11	82	0.999919
655	87	12			0.999964
656	87		12		0.999964
663	84	15			0.999986
670	20		80		0.999996
673	80			20	0.995493
674		80	20		0.995493
676	80		20		0.995493
680		20	80		0.995493
685	20			80	0.995493
686	20	80			0.995493
687		80	20		0.995493
693	80		20		0.995493
694	25			75	0.996473
696		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain