SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2811

Length: 2734 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2811
AATGTAGCAACTATAAAACGAAGTAACCTCGGCGTCATTAAATAGTCCCCTCAGCAAACCCTGGAATATATAGTTTTTAACTGCACAAGTCAGCATTTTATTTTTATTCGTGCGGGCAAAAAAGGAAATGCGGAGAGTATTAGTTCTATGATCCATGGAAATCCAAGGAGCTTTAATTATTCTAATCGAAATAATTATCTATAGGGTTAAGAAATGGCGCAGTCCCTGGTAGGGAAAATGCTGGATTGCGGTTTAATGATTTCGTGTTTACATGGATTCAGAGCTTCGATTCTCTGTGCGAAAAGCTTTAAAAACGCTAGTCCGCTAAAGAATGTAATTCGTCTACCAAAGAAGCAATGCCGGCGCTTTGCCGTCCCCGTTCATTTGCGGAGAAGATCTATTTTCGCAGTTAATTCTTCTTCTTCTTCTGGCTCTGAATTTGAGATAATCTCCACCAGAGAGTTTTCAGATGGAAGCATTATGTTTCACTTTGGCATCCCGGAACGAATCGCGGAGACGGAACAACTTTGTTCGAATCGGCAACCGTTGTCCGCATTAGCAGAAGTTGACATGCCAACAGATGCGAGCGCAATTAACGGCAATTTGGTCATGGATTCAGGATCGGGGGTTTTCAAGGATCCTTGCGAGTCAAAGGCGAGTAAAACTGAGGATACAAATTTAGTTTCTGTTGATAAAAATAAAATGTTGTCGGAGAATGAGGAGGGTACTGGCGGCTTTAGTACTACAAAGAAAATGAAAATGTCGGAGGAAGACATAGGCAGGGTCACAACAATTGTAGTAAAAAATTCCGGTGATGAAACGGGCAAGCGTAAGGAATGTTGTGAACTTAATGAGAAGTTAAGGGAGGATAGGGTTAGTGTCGCTGGTACAAGGTCAGAGGAAAAGAACGGGGTTTCTGGTGAAATTGGAAGTGGAGCTGTTAGCAACACTGACACAAATTTACGGGGTGAAATCTCTGAATTTCTATCGACTGATGGGATAAACTCAGATGAGAGTGGTGGATCTATCAGCAATGCAAAAGGGACCCTGACAGTTGACACGATGCTTGAACCCGCGGAAAAATTTGGAGAAAAATTGGTTGGACCTGATGACAATACACAGATAAAGTTGGATGACGCAGTGCTCGAGAGCATTGAGAAATTCGGAGAGCAGTCTGGTGTTGAGAACGGTCCAAAGGAAGATTCTGAACAGAAAGCAGAAAATGGGTGTATATCTGAAATAACTTCTCAATTTCAACAAAAGATTGAAGAGAAATGTGAAACTGTAGCTGCTGAAGATTTCGAAACAGTGGAAGAATTAAAGGATGCAGTGGAGCGGAAGGAGAAGGATGGAGAAGGGGATAAACTTGAAACAGGGAGAACACTTAGTCTTCTATCTGGTGTTTTTATGCTTCCACATCCTACTAAGGCATCTACTAGGTGGTGAGGATGCTTACTTTGTAACACATAATAATTGGGTTGGGGTTGCTGATGGGGTTGGTCAGTGGGCACTCGAAGGAATCAATTCAGGACTGTATGCACAGGAGCTTATGGAAAATTGTAGGAAGCTTGTATCTGAAGAAAGTACAAGTGCTGACCCAAAGCAAGTACTTGTCATGAGTGCTATGGAAGCAAAGTCTGCAGGCTCATCAACAGTGTTGGTAGCCAGTCTGGTTGGTGAGACTCTTCACGTTGTAAACCTTGGAGATTCTGGATTTATTGTCATTCGAGAAGGATCTGTTATTGCAAAGTCATCTCCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTACTGGCAGAAAAGGCACAGGAGAGAGGCAAGTCGACATCAGGGACCAGCCCCTTTTCTGAGGCAGCTCGAGCAGCTGGCTATAATACATACATTGGTGGGAAGCTGGATGATGTCACGGTCATTGTATCATTAGTGAAAGGCAATGCCAAAGAGCAGGAGGAGATTTAAACTTTAGAGTTTATACAGGTTGCTGACAACCGATTCAGAATATCGGGTTATCTTCCGAATCTCTCATTTTTGGGGCATGTGCTTGTATGTACATGAAAAGTATATTTGTTTAAAAGATAACACGAGACTGTAACATAGAAATGTCAATGGTGTAATCTTCTTGGTAAACGAGAAAGATATTGTACCGTGTGAAATGTATAGTTGTTGTAGGGACACTGATCATTTGAATTCAATTAATACACAAATAGCAGGAATTGGTGGACATTCTTGATAAAAGGTTGATGTAAATTTCCTTTCTTCACCCATCATTGGGTATTTTATACTGATGGGTTTGAACTCTGTTCCATAAATCTGCCCATCCTTTGTATACTTTTAAGTAGGAGCATTCATCTATGGTGACCGTTCGTCAATGCAGACCAAAAGCGGGGATTCAACATGGGAACACGTTGTCTCGCTTACTATGCTTGAAGCTTTTCTGTGATAAATAAATGCAGATAAATCATTGAACTTACAGAAAATTCCAGAGTTGGTCACATTATTGTATTAATGGTCGATAAACTTTGGAAACGCTCAAACTCGTCTAATGATTTATGAAGT

Ace file of the UniGene sp_v2.0_unigene2811

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2C n=1 Tax=Zea mays RepID=B6U2F2_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein phosphatase 2c containing expressed	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	75%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR010822	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACC8

Fln msg: your sequence is longer than subject: 271 - 238

Fln protein: MQWSGRRRMEKGINLKQGEHLVFYLVFLCFHILLRHLLGGEDAYFVTHNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESTSADPKQVLVMSAMEAKSAGSSTVLVASLVGETLHVVNLGDSGFIVIREGSVIAKSSPMTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATLLAEKAQERGKSTSGTSPFSEAARAAGYNTYIGGKLDDVTVIVSLVKGNAKEQEEI*

Protein Length: 272

Fln nts: AATGTAGCAACTATAAAACGAAGTAACCTCGGCGTCATTAAATAGTCCCCTCAGCAAACCCTGGAATATATAGTTTTTAACTGCACAAGTCAGCATTTTATTTTTATTCGTGCGGGCAAAAAAGGAAATGCGGAGAGTATTAGTTCTATGATCCATGGAAATCCAAGGAGCTTTAATTATTCTAATCGAAATAATTATCTATAGGGTTAAGAAATGGCGCAGTCCCTGGTAGGGAAAATGCTGGATTGCGGTTTAATGATTTCGTGTTTACATGGATTCAGAGCTTCGATTCTCTGTGCGAAAAGCTTTAAAAACGCTAGTCCGCTAAAGAATGTAATTCGTCTACCAAAGAAGCAATGCCGGCGCTTTGCCGTCCCCGTTCATTTGCGGAGAAGATCTATTTTCGCAGTTAATTCTTCTTCTTCTTCTGGCTCTGAATTTGAGATAATCTCCACCAGAGAGTTTTCAGATGGAAGCATTATGTTTCACTTTGGCATCCCGGAACGAATCGCGGAGACGGAACAACTTTGTTCGAATCGGCAACCGTTGTCCGCATTAGCAGAAGTTGACATGCCAACAGATGCGAGCGCAATTAACGGCAATTTGGTCATGGATTCAGGATCGGGGGTTTTCAAGGATCCTTGCGAGTCAAAGGCGAGTAAAACTGAGGATACAAATTTAGTTTCTGTTGATAAAAATAAAATGTTGTCGGAGAATGAGGAGGGTACTGGCGGCTTTAGTACTACAAAGAAAATGAAAATGTCGGAGGAAGACATAGGCAGGGTCACAACAATTGTAGTAAAAAATTCCGGTGATGAAACGGGCAAGCGTAAGGAATGTTGTGAACTTAATGAGAAGTTAAGGGAGGATAGGGTTAGTGTCGCTGGTACAAGGTCAGAGGAAAAGAACGGGGTTTCTGGTGAAATTGGAAGTGGAGCTGTTAGCAACACTGACACAAATTTACGGGGTGAAATCTCTGAATTTCTATCGACTGATGGGATAAACTCAGATGAGAGTGGTGGATCTATCAGCAATGCAAAAGGGACCCTGACAGTTGACACGATGCTTGAACCCGCGGAAAAATTTGGAGAAAAATTGGTTGGACCTGATGACAATACACAGATAAAGTTGGATGACGCAGTGCTCGAGAGCATTGAGAAATTCGGAGAGCAGTCTGGTGTTGAGAACGGTCCAAAGGAAGATTCTGAACAGAAAGCAGAAAATGGGTGTATATCTGAAATAACTTCTCAATTTCAACAAAAGATTGAAGAGAAATGTGAAACTGTAGCTGCTGAAGATTTCGAAACAGTGGAAGAATTAAAGG_-_ATGCAGTGGAGCGGAAGGAGAAGGATGGAGAAGGGGATAAACTTGAAACAGGGAGAACACTTAGTCTTCTATCTGGTGTTTTTATGCTTCCACATCCTACTAAGGCATCTACTAGGTGGTGAGGATGCTTACTTTGTAACACATAATAATTGGGTTGGGGTTGCTGATGGGGTTGGTCAGTGGGCACTCGAAGGAATCAATTCAGGACTGTATGCACAGGAGCTTATGGAAAATTGTAGGAAGCTTGTATCTGAAGAAAGTACAAGTGCTGACCCAAAGCAAGTACTTGTCATGAGTGCTATGGAAGCAAAGTCTGCAGGCTCATCAACAGTGTTGGTAGCCAGTCTGGTTGGTGAGACTCTTCACGTTGTAAACCTTGGAGATTCTGGATTTATTGTCATTCGAGAAGGATCTGTTATTGCAAAGTCATCTCCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTACTGGCAGAAAAGGCACAGGAGAGAGGCAAGTCGACATCAGGGACCAGCCCCTTTTCTGAGGCAGCTCGAGCAGCTGGCTATAATACATACATTGGTGGGAAGCTGGATGATGTCACGGTCATTGTATCATTAGTGAAAGGCAATGCCAAAGAGCAGGAGGAGATTTAA___ACTTTAGAGTTTATACAGGTTGCTGACAACCGATTCAGAATATCGGGTTATCTTCCGAATCTCTCATTTTTGGGGCATGTGCTTGTATGTACATGAAAAGTATATTTGTTTAAAAGATAACACGAGACTGTAACATAGAAATGTCAATGGTGTAATCTTCTTGGTAAACGAGAAAGATATTGTACCGTGTGAAATGTATAGTTGTTGTAGGGACACTGATCATTTGAATTCAATTAATACACAAATAGCAGGAATTGGTGGACATTCTTGATAAAAGGTTGATGTAAATTTCCTTTCTTCACCCATCATTGGGTATTTTATACTGATGGGTTTGAACTCTGTTCCATAAATCTGCCCATCCTTTGTATACTTTTAAGTAGGAGCATTCATCTATGGTGACCGTTCGTCAATGCAGACCAAAAGCGGGGATTCAACATGGGAACACGTTGTCTCGCTTACTATGCTTGAAGCTTTTCTGTGATAAATAAATGCAGATAAATCATTGAACTTACAGAAAATTCCAGAGTTGGTCACATTATTGTATTAATGGTCGATAAACTTTGGAAACGCTCAAACTCGTCTAATGATTTATGAAGT

Fln Alignment:

Contig2811___GGEDAYFVTHNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESTSADPKQVLVMSAMEAKSAGSSTVLVASLVGETLHVVNLGDSGFIVIREGSVIAKSSPMTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATLLAEKAQERGKSTSGTSPFSEAARAAGYNTYIGGKLDDVTVIVSLVKGNAKE
D5ACC8______________GGEDAYFVTRNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESPSADPRQVLVMSAMEAKSAGSSTVLVASLIGQTLHVVNLGDSGFIVIRGGSVIVKSSPMTHGFNFPYQIERGDDPSLLLESYDITLNDGDVIVTATDGLFDNLYDHEIASIIQNSLQSGLGPKEMATLLAEKAHERGKSTSGSSPFSDAARAVGYNTYIGGKLDDVTVIVSLVKVNTKE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1768		88		11	0.923564
1855		28	71		1.0
1938		16		83	0.994512
2027			85	14	0.993533
2028		85	14		0.993533
2029		85	14		0.993533
2030		85	14		0.993533
2049	83			16	0.999991
2053		16	83		0.999991
2060	83		16		0.999991
2062	83	16			0.999991
2064		16		83	0.999991
2065	83			16	0.999991
2306	10			90	0.90298
2307		10		90	0.90298
2308	10	90			0.90298
2320		10	90		0.90298
2322	90			10	0.90298
2323	90			10	0.90298
2630	14			85	0.993533
2631	85	14			0.993533
2633	85			14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
414	429	TTC TTC TTC TTC TTC T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain