SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2808

Length: 1460 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2808

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	No apical meristem-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZFA1_PICSI	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	46%
Blast2go	no apical meristem-like protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	74%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	74%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	74%
Blast2go	DNA binding	GO:0003677	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BJQ5

Fln msg: your sequence is shorter than subject: 429 - 454

Fln protein: MAEKNRNSASSSQLIDSKLEEYRIKRCPACGHQIEREEALQDWAGLPSGVKFDPTDQELIEHLQGKISSDNSSPHPLIDDFIPTIEGGDGICYTHPEKLPGISRDGLVRHFFHRPSKAYTTGTRKRRKIQTPCAEVGEGETRWHKTGKTRPVMVNGMQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGSQEEEKEGELVVSKVFYQTQPRQCNWEKATDSKDAGNASRTETTQVSERCTAGETVSSSDRHNYSAYNPLEEQARATHSSHKLSIAQSRSESSDQGIDSRSPESTHCTTSIGDGKVDLHLNKDTHVVKPCNHCNNMMIREDQIASGSGEEQRDHLPSLNESHFTNLLFCHETLQAGALNSTAKLQRYGSVDLDDLAAEFGLPLDDKTNSEILVDTASMTKEVQEVLSNSQEDWLKYFG*

Protein Length: 430

Fln nts: ATGGGGAAATCTGGAAACTTGTTTTTCTGGTCATTGGGTTCTGAACACGCCATATTTTTCAATCTGAATCCAGTATTTCTGGGGAGCAGCAGCAGAATGAAATGGTCTGTTTATA_-_ATGGCGGAGAAAAATAGAAACTCGGCAAGCAGTTCTCAGTTGATTGACTCCAAACTTGAAGAGTATCGAATTAAACGATGTCCTGCGTGTGGTCACCAGATTGAGCGCGAAGAGGCTCTTCAAGATTGGGCCGGCTTGCCTTCTGGAGTAAAATTTGACCCTACAGATCAGGAGCTCATAGAACATCTTCAAGGAAAGATTAGCTCTGATAATTCTAGCCCTCATCCTTTAATTGATGACTTCATTCCTACCATTGAAGGTGGAGATGGGATCTGCTATACTCATCCAGAAAAACTGCCAGGAATATCTCGTGATGGCCTTGTAAGGCATTTCTTTCATCGACCATCTAAAGCTTACACCACAGGCACCAGAAAAAGAAGAAAGATCCAAACACCCTGCGCTGAGGTTGGTGAAGGTGAAACAAGATGGCACAAGACTGGAAAAACGAGACCGGTGATGGTTAATGGCATGCAGAAAGGCTGCAAGAAAATCTTAGTTCTTTACACTAACTTTGGGAAACACAGGAAACCCGAGAAAACAAATTGGGTGATGCATCAATATCATTTGGGTTCACAGGAAGAAGAGAAAGAAGGGGAGCTCGTGGTATCGAAGGTCTTCTATCAGACACAACCAAGGCAATGCAATTGGGAAAAAGCTACAGATTCTAAGGATGCTGGCAACGCCAGTAGAACAGAAACAACTCAGGTTTCAGAGAGATGCACAGCTGGAGAAACTGTTAGTTCCAGTGACCGGCATAATTATAGTGCTTATAATCCCTTGGAAGAGCAAGCAAGAGCCACTCACAGTTCCCACAAATTATCTATTGCCCAGTCCAGATCAGAAAGTAGTGATCAGGGAATCGATAGCAGGAGCCCTGAAAGCACCCATTGCACTACTAGTATTGGTGATGGAAAAGTTGATTTGCATCTCAATAAAGATACCCACGTTGTTAAACCTTGTAATCACTGCAATAACATGATGATCAGAGAGGATCAGATAGCCAGTGGGTCTGGAGAAGAGCAGAGAGACCATCTGCCAAGTTTGAATGAAAGTCATTTCACCAATTTACTCTTCTGTCATGAAACACTCCAAGCGGGTGCTCTTAATTCCACTGCAAAACTTCAACGTTATGGTAGCGTAGACTTAGACGACCTAGCAGCAGAATTCGGTTTACCCCTTGATGATAAAACCAATAGTGAAATCTTGGTGGATACTGCTTCCATGACTAAAGAGGTGCAGGAAGTTTTGTCAAACAGTCAAGAAGATTGGCTGAAATACTTTGGGTAA___ATACAGCTCACAGTGGTTCCTTCTCACAGATTTGTTTTCATCGCATTCTTATGATAAT

Fln Alignment:

Contig2808___MAEKNRNSASSSQLIDSKLEEYRI---KRCPACGHQIEREEALQDWAGLPSGVKFDPTDQELIEHLQGKISSDNSSPHPLIDDFIPTIEGGDGICYTHPEKLPGISRDGLVRHFFHRPSKAYTTGTRKRRKIQTPCAEVGEGETRWHKTGKTRPVMVNGMQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGSQEEEKEGELVVSKVFYQTQPRQCNWEKATDSKDAGNAS-RTETTQVSERCTAGETVSSSDRHN-------YSAYNPLE-EQARATHSSHKLSIAQSRSESSDQGIDSRS-----PESTHCTT-SIGDGKVDLHLNKDTHVVKPCNHCNNMMIREDQIASGSGEEQR-----DHLPSLNESHFTNLLFCHETLQAGALNSTAKLQRYGSVDLDDLAAEFGLPLDDKTNSEILVDTASMTKEVQEVLSNSQEDWLKY
A5BJQ5______________MNKTHLGSISSSDLIDAKLEEHQMCGSKQCPGCGHKLETKP---DWLGLPAGVKFDPTDQELIEHLEAKVEAKDMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEC-DLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQLEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGNSEPNSRRDSGSGSCSSKEVIPQRDELSGAGVGAAISSYSPLDIQQLKSDH----FSFAPFRKSFDEVGIGEASTAREAPASGTCEEHEIHDHQRPHHVTHDPQ-PQPQHHHHHHHHPHHQLATAAFHITRPSHSISAIISPPPLHHTSIILDEDSYHVSRIMLQNENFQQHHQQPQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEADWLKY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1321		10	90		0.90298
1324		10	90		0.90298
1326	90			10	0.90298
1327			10	90	0.90298
1330		10		90	0.90298
1331			90	10	0.90298
1332		90		10	0.90298
1333			10	90	0.90298
1334			10	90	0.90298
1336		90		10	0.90298
1337	90		10		0.90298
1339		10	90		0.90298
1426		12		87	0.992554
1457			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain