SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2784

Length: 1275 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2784

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_001078119.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAF20226.1\|AC012395_13 putative RING zinc finger protein [Arabidopsis thaliana] gb\|AEE74513.1\| RING/U-box domain	-	-	7.0e-14	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	ring u-box domain-containing protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABH9

Fln msg: your sequence is longer than subject: 261 - 205

Fln protein: MVRSYRSLKHRRDLGCHSNFVFFLFTTKQIINVRAGSGFKRKTPGEGFWPSRWGKMNGAASNCDDREDLEVRSKQLECRLRDRASKALIVLDDDDSSNSDVEILSASSSSFSQGRRSMSNRRGRVTVINLEDLELQVEPAGSRMPFGRARPLKHQNRSCEQNTLSCRDLVDLTTPSEEGQYISSNVTKKRKPAPSAEVKEIKLSCAICMENMKEETTTICGHVFCKKCIVRAIEVNKKCPTCRKKLTMKNIHRIYISGSA*

Protein Length: 262

Fln nts: CGTCGTGACCTTGGGTGTAGTGGATTTGG_-_ATGGTTCGGAGTTATCGGTCATTAAAACACCGTCGTGACCTTGGCTGTCACTCAAATTTTGTCTTCTTCTTGTTCACAACAAAGCAAATCATAAATGTAAGAGCAGGAAGTGGTTTTAAGCGTAAGACCCCCGGCGAAGGATTTTGGCCGTCTCGTTGGGGTAAAATGAACGGCGCAGCCTCTAATTGCGACGACAGAGAGGATTTGGAGGTGAGATCAAAGCAACTGGAATGCAGACTGAGGGATCGCGCATCGAAGGCGCTTATAGTGCTCGACGATGACGACAGCAGCAATAGCGACGTTGAGATTTTATCGGCAAGTTCAAGTTCTTTCTCTCAGGGAAGGAGATCAATGTCTAATCGGAGGGGGCGGGTCACAGTAATAAATTTAGAAGATCTGGAACTTCAAGTTGAACCTGCAGGATCTCGAATGCCATTTGGGAGGGCAAGGCCTTTGAAACATCAGAATCGATCTTGTGAGCAAAATACATTGTCATGTAGAGACCTAGTTGATCTTACAACTCCAAGTGAAGAGGGCCAATATATTAGTTCCAATGTAACCAAGAAGAGGAAGCCTGCTCCCTCTGCTGAAGTAAAGGAAATAAAGCTATCATGTGCAATCTGTATGGAGAATATGAAGGAAGAGACAACAACCATATGTGGACATGTTTTCTGCAAGAAATGCATAGTACGTGCCATTGAAGTTAACAAGAAATGTCCGACATGTCGTAAGAAGTTGACAATGAAAAATATTCACCGGATCTACATTTCTGGCAGCGCATGA___CATTCTACAACTGAAATTGTGAAGTGACAGTTAGTTGTTTTGAGTGTTTTTTTTGCTTACCAGCCTTGTAGAAATGGTTGTTGGTATGGATCTCGTGTGGTTTCAAGCTATTTTAAATTTTTGGGCTATTTATAAGACTTTATCGACTTGCTTCTTTAGTGATCAATAATTTTTGCTGTTCTCAGCAAAGTATAAGCATAATGTCGATGAACAATTTCTTTATTACATAAATCTGAGAATTGCTTCACTAAATGTGAGAAGTTCAATTTGGAACAGCTAAATGTCTTTATTACACACAAATCTGAGAACAACTTCACTACATTATTTCCCGACTTTTCGTTGGAGGTTCACTTTGTGCTGAATCATGTAGTCCACTTTGAAAATTTTGAGCAGTATTCCTTGTATTAGGTGTTCTATAGATATTTTTGTCAATGATGCTGGATTAAGCTACTCTGTAGGAATT

Fln Alignment:

Contig2784___MNGAASNCDDREDLEVRSKQLECRLRDRASKALIVLXXXXXXXXXVEILXXXXXXXXXXXXXXXNRRGRVTVINLEDLELQVEPAGSRMPFGRARPLKHQNRSCEQNTLSCRDLVDLTTPSEEGQYISSNVTKKRKPAPSAEVKEIKLSCAICMENMKEETTTICGHVFCKKCIVRAIEVNKKCPTCRKKLTMKNIHRIYISGS
D5ABH9______________MNGAASNCDDREDLERRSKQLEYRRRDRAPKALIVLDDDDSGNGDVQISSASSSSFAQARSSVANRSGQLTVINLEDLELQVGPAGTRMPLGRVRSLKNRNRSCERKTSSCRDLVDLTTSNDECQLNSSMVSKKRKPALSTGVKEIKLSCAICMDKMKEETTTICGHVFCKKCIVRAIEVYKQCPSCRKKLTMKSIHRIYISGS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
61	28	71			1.0
63			28	71	1.0
66			28	71	1.0
69		71	28		1.0
70	28	71			1.0
71	28			71	1.0
72	28			71	1.0
74		14	85		0.993533
77	28		71		1.0
78	28			71	1.0
79		71	28		1.0
81		71		28	1.0
83		71		28	1.0
84	71			28	1.0
108	87		12		0.992554
109	87		12		0.992554
110		87	12		0.992554
176			75	25	1.0
209		90	10		0.90298
403			88	11	0.923564
405		88		11	0.923564
406		11	77		0.968132
407	11		77	11	0.968132
408		11	88		0.923564
460		87		12	0.992554
468		87	12		0.992554
679	80	20			0.999996
681	80			20	0.999996
684	80		20		0.999996
685		80		20	0.999996
686	80		20		0.999996
690	80			20	0.999996
692	80		20		0.999996
693			20	80	0.999996
694		20	80		0.999996
697		20	80		0.999996
702	10		90		0.90298
864			66	33	1.0
865			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain