SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2783

Length: 2168 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2783
AATGTACTTGTGGAGGGAACAAGACAAAAGAGAGTAACAGAGGCGAAGGATTTGGATAGTACTTCTTTGATGGAAATTTCAACTTCAGATGCTGTACATATTCCTGTTCCCAGTATTCCAGATATAAACAATACTCATATTTCATCAATCCCTTCTCGAGGAATGGGAACCTCATCTCAACATCCTGAAATGCGTGGAAATCTTCCAGTTGCTTCAGCATTTGCTGCTACATCGTCTGTTGTTGCTTTGCCACAGGTCATAGCAACAAGTAAACGTAATGTTCTTAATGAAGCTCCTGAAAATGTTAAAAAAGATTCAGACACATCTGTTGCTCTTGCAAATCAAAATCATGTAGGACATAGTGATGCCTCGTTACACAATTTAGTGGGTAGGGAGAGTGCTCACAGCAGAGGTGAAAGAAGACCTTCTGACTCTGAAAGTCAGGTTGTTGGGTTAGTAGATTCCAGGGAAAATTCAGAAGATGAATCTGTGTCTTCATCTAATACGCATAATACACACCCTATAATGGATGATGTTGCAGAATGTGAAATCCGATTGGAATATCTGCAAATTGGTGAACGCATTGGACTAGGTTCTTATGGAGAAGTTTATCACGCAGACTGGAATGGCACGGAAGTTGCAGTTAAGAAGTTTCTTGATCAAGATTTTTCAGGAGATGCATTAGAGCAGTTCCGCAGTGAAGTGCGAATCATGCGAAGATTGCGTCACCCAAATATTGTTCTTTTTATGGGAGCTGTCACTCGGCCTCCAAATCTCTCTATTTTGACTGAGTTTCTTCCAAGAGGAAGCTTGTATAGGCTAATCCACCGCCCTAACATTCAAATAGATGAGAAGCGGCGTTTACGAATGGCTCTTGATGTGGCTCAAGGAATGAATTATTTGCACAGTAGCAATCCCGTAATAGTTCATCGAGATCTGAAGTCGCCAAATCTTCTCGTTGATAAAAATTGGGTGGTCAAGGTTTGTGATTTTGGCTTGTCACGCTTGAAGCACCATACATTCCTGTCTTCAAAGTCAACTGCAGGAACGCCGGAATGGATGGCACCAGAAGTTCTGCGGAATGAACCATCGAATGAAAAGTGTGATGTTTTTAGCTTTGGTGTGATCTTATGGGAGTTGGCTACTTTGCGTATGCCATGGAGTGGAATGAATCCCATGCAGGTAGTTGGTGCTGTTGGTTTTCAGAATCGTCGCCTTGATATTCCCAAGGAAATTGATCCAGATGCCGCAAAGATTATTTCTGAATGCTGGCAGAATGATCCAAATCTACGGCCTTCATTTGGAGAGCTTATGGTTGCTCTCAAGTCTTTGCAGAGGCTGCTTGTTTCACCTCTGTGAGAAACATGGCCTTGTCCTTTTCACCACAATAAGAAGCTGTAACTATCCAGATACGGATAAGATGATATGCTCTGAGAAACCTTAGAGCTATTGTTTGGTCCCTAAATCTAGTCGAGGGAAACAAATGATGCTGAAATTATGGTGCTGAATAGTGATATTCCTGGGGGTTGTCTTAAACATGAGCTATGGTTCAGTATATGCGTGCCTGAACCAAAAACAGCTAAACTCTATTAAAGGAAATGTAAAAGACCATGGCTATCCCATTCAGCAACTAAGAAAATTTTGGGAAATGGTTCCTTGAGAATTGTCAATTCCAAAACAAGTTCGAGTGTTGCGTTGGTCAAGTTTCTATATACAAAATTCATACAAAGTACACTGAAAGACCTTTCTGATTGTTTCATAAGTGGGTACGGCGGCTGTGCGAAGCACATAGGAAGTCAAACTTTTTCTGATTCTTCTGTAAATGTTAGTATAGGCCATGTCCATTCAAAACAGGATGGGCACGCGGAAGTTTCTTGTTTGTCATATAAATTGCTTTGACAGAGGGTCTTTTGACGCCTGGCAGTTTGCTTTGCTCTGTATACAGGCTTCTACTCTTCCGCTTTGTCAAATTTATAAATGTAGAAAATTGTCTGTGTACAGACAATCATGCCAGTTAATATGGATGATGTAATTTGATCTTGTACACAATTTACATTATTGCACCAAGAGAAGCGAAGTGCTTTCCAGTCTGGGTGGGAGAGATGCTGATGTAATGTATGTATGTAGATACTAATAAAATAAATGAAATGGAAAATGTTTAATGTACT

Ace file of the UniGene sp_v2.0_unigene2783 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	3.0e-27	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	serine threonine-protein kinase ctr1-like	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	88%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	88%
Blast2go	plastid	GO:0009536	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3		IPR015783	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: your sequence is longer than subject: 430 - 319

Fln protein: MEISTSDAVHIPVPSIPDINNTHISSIPSRGMGTSSQHPEMRGNLPVASAFAATSSVVALPQVIATSKRNVLNEAPENVKKDSDTSVALANQNHVGHSDASLHNLVGRESAHSRGERRPSDSESQVVGLVDSRENSEDESVSSSNTHNTHPIMDDVAECEIRLEYLQIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGDALEQFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSILTEFLPRGSLYRLIHRPNIQIDEKRRLRMALDVAQGMNYLHSSNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVFSFGVILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKEIDPDAAKIISECWQNDPNLRPSFGELMVALKSLQRLLVSPL*

Protein Length: 431

Fln nts: AATGTACTTGTGGAGGGAACAAGACAAAAGAGAGTAACAGAGGCGAAGGATTTGGATAGTACTTCTTTG_-_ATGGAAATTTCAACTTCAGATGCTGTACATATTCCTGTTCCCAGTATTCCAGATATAAACAATACTCATATTTCATCAATCCCTTCTCGAGGAATGGGAACCTCATCTCAACATCCTGAAATGCGTGGAAATCTTCCAGTTGCTTCAGCATTTGCTGCTACATCGTCTGTTGTTGCTTTGCCACAGGTCATAGCAACAAGTAAACGTAATGTTCTTAATGAAGCTCCTGAAAATGTTAAAAAAGATTCAGACACATCTGTTGCTCTTGCAAATCAAAATCATGTAGGACATAGTGATGCCTCGTTACACAATTTAGTGGGTAGGGAGAGTGCTCACAGCAGAGGTGAAAGAAGACCTTCTGACTCTGAAAGTCAGGTTGTTGGGTTAGTAGATTCCAGGGAAAATTCAGAAGATGAATCTGTGTCTTCATCTAATACGCATAATACACACCCTATAATGGATGATGTTGCAGAATGTGAAATCCGATTGGAATATCTGCAAATTGGTGAACGCATTGGACTAGGTTCTTATGGAGAAGTTTATCACGCAGACTGGAATGGCACGGAAGTTGCAGTTAAGAAGTTTCTTGATCAAGATTTTTCAGGAGATGCATTAGAGCAGTTCCGCAGTGAAGTGCGAATCATGCGAAGATTGCGTCACCCAAATATTGTTCTTTTTATGGGAGCTGTCACTCGGCCTCCAAATCTCTCTATTTTGACTGAGTTTCTTCCAAGAGGAAGCTTGTATAGGCTAATCCACCGCCCTAACATTCAAATAGATGAGAAGCGGCGTTTACGAATGGCTCTTGATGTGGCTCAAGGAATGAATTATTTGCACAGTAGCAATCCCGTAATAGTTCATCGAGATCTGAAGTCGCCAAATCTTCTCGTTGATAAAAATTGGGTGGTCAAGGTTTGTGATTTTGGCTTGTCACGCTTGAAGCACCATACATTCCTGTCTTCAAAGTCAACTGCAGGAACGCCGGAATGGATGGCACCAGAAGTTCTGCGGAATGAACCATCGAATGAAAAGTGTGATGTTTTTAGCTTTGGTGTGATCTTATGGGAGTTGGCTACTTTGCGTATGCCATGGAGTGGAATGAATCCCATGCAGGTAGTTGGTGCTGTTGGTTTTCAGAATCGTCGCCTTGATATTCCCAAGGAAATTGATCCAGATGCCGCAAAGATTATTTCTGAATGCTGGCAGAATGATCCAAATCTACGGCCTTCATTTGGAGAGCTTATGGTTGCTCTCAAGTCTTTGCAGAGGCTGCTTGTTTCACCTCTGTGA___GAAACATGGCCTTGTCCTTTTCACCACAATAAGAAGCTGTAACTATCCAGATACGGATAAGATGATATGCTCTGAGAAACCTTAGAGCTATTGTTTGGTCCCTAAATCTAGTCGAGGGAAACAAATGATGCTGAAATTATGGTGCTGAATAGTGATATTCCTGGGGGTTGTCTTAAACATGAGCTATGGTTCAGTATATGCGTGCCTGAACCAAAAACAGCTAAACTCTATTAAAGGAAATGTAAAAGACCATGGCTATCCCATTCAGCAACTAAGAAAATTTTGGGAAATGGTTCCTTGAGAATTGTCAATTCCAAAACAAGTTCGAGTGTTGCGTTGGTCAAGTTTCTATATACAAAATTCATACAAAGTACACTGAAAGACCTTTCTGATTGTTTCATAAGTGGGTACGGCGGCTGTGCGAAGCACATAGGAAGTCAAACTTTTTCTGATTCTTCTGTAAATGTTAGTATAGGCCATGTCCATTCAAAACAGGATGGGCACGCGGAAGTTTCTTGTTTGTCATATAAATTGCTTTGACAGAGGGTCTTTTGACGCCTGGCAGTTTGCTTTGCTCTGTATACAGGCTTCTACTCTTCCGCTTTGTCAAATTTATAAATGTAGAAAATTGTCTGTGTACAGACAATCATGCCAGTTAATATGGATGATGTAATTTGATCTTGTACACAATTTACATTATTGCACCAAGAGAAGCGAAGTGCTTTCCAGTCTGGGTGGGAGAGATGCTGATGTAATGTATGTATGTAGATACTAATAAAATAAATGAAATGGAAAATGTTTAATGTACT

Fln Alignment:

Contig2783___EIRLEYLQIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGDALEQFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSILTEFLPRGSLYRLIHRPNIQ--IDEKRRLRMALDVAQGMNYLHSSNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVFSFGVILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKEIDPDAAKIISECWQNDPNLRPSFGELMVALKSL
D5A8V0______________EIPWSDLVLKERIGAGSFGTVHHADWHGSDVAVKILIEQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPWSGLNAAQVVGAVGFQNRRLQIPKDVKPDIAAIIEACWANDSRKRPSFASIMELLKPL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
2000	12		87		0.992554
2040		11		88	0.923564
2116	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
43	55	TACA TACA TACA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain