SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2753

Length: 1213 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2753

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGV0.1\|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb\|ACN59385.1\| leucine-rich repeat receptor-like	-	-	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	48%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GQI1

Fln msg: your sequence is longer than subject: 361 - 307

Fln protein: MTHGSKSMVIVPNTTKSRAFTLEEMTTATQNFSHKIGQGGFGSVFFGRLEQGEDIAVKVLSVVSKQGVQEFLNEVELFSRVHHKNLVSLLGYCIESRELMLVYEHMSGGSLKDRLYGPIAEHSQLNWKTRLQIASDAAQGLEYLHIGCTPKIIHRDIKTANILLDRKFNGKLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYFSTHMLTEKSDVYSYAVVLLEIICGRRPINVKLPGDQLNLIRWVTPYVEMDENPAKMEEIIDKRLGRNYDINSIIGVAKLAIRCVHPEPSSRPSVDEVVAKLKEAIKLEKDKDSLISEIDIEYGDLGASSACLSVDSSGLKEMDSAESSSKISKQR*

Protein Length: 362

Fln nts: AAAAGGAATCCAAACATGTCGTTGACCAAGGTCAGGAACACCTTGATTTTACGATTGTTCAT_-_ATGACCCACGGCAGTAAGTCCATGGTTATAGTGCCCAATACAACAAAGTCCCGGGCATTTACTCTAGAAGAGATGACGACAGCCACACAAAACTTCAGTCACAAGATTGGTCAAGGGGGTTTTGGATCGGTTTTCTTTGGTAGATTGGAGCAAGGAGAAGATATAGCGGTCAAAGTGCTCTCCGTCGTCTCCAAACAAGGAGTTCAGGAGTTCCTTAATGAGGTTGAGCTTTTCTCTAGAGTCCATCATAAGAACTTGGTGTCATTGCTAGGATACTGCATTGAATCAAGAGAACTTATGCTTGTCTACGAGCACATGTCTGGAGGGTCCTTAAAGGATCGCCTATATGGTCCTATTGCAGAACATTCTCAACTAAATTGGAAAACCAGGCTCCAAATAGCTTCAGATGCAGCTCAGGGACTGGAATACCTCCATATAGGTTGCACTCCAAAGATAATTCACAGGGATATCAAGACGGCCAACATTCTTCTAGACAGGAAGTTCAATGGAAAACTCGCCGATTTCGGCCTTTCAAGAATGACAATTGATGGGGAGGCTTCTTATGTTATTACTTCAGTGAAAGGAACCTTAGGATACCTGGATCCAGCGTATTTTAGCACTCACATGTTGACGGAGAAGAGCGATGTATATAGCTATGCAGTTGTTTTGCTGGAGATCATCTGCGGTAGACGGCCCATAAATGTAAAATTACCTGGAGACCAACTGAACCTTATTCGATGGGTGACACCGTATGTGGAGATGGACGAAAATCCTGCAAAAATGGAGGAAATCATAGACAAGAGGTTGGGTAGAAATTACGACATCAACTCCATCATTGGGGTTGCCAAATTAGCGATCCGGTGTGTTCACCCCGAACCATCCTCTAGGCCGAGCGTAGATGAGGTAGTGGCAAAGCTCAAAGAGGCTATCAAACTCGAGAAGGATAAGGATTCCCTAATTTCGGAAATTGATATTGAATACGGAGATTTAGGTGCGAGCTCGGCCTGTTTATCTGTAGATTCCAGTGGACTCAAGGAAATGGACTCTGCTGAAAGCAGCTCAAAAATATCTAAACAACGATGA___TCATATGTTCACGAGATTGATATCAATATCGATTATTAGTAATGAAAGATATTTAAGGTTTACTAGAT

Fln Alignment:

Contig2753___NTTKSRAFTLEEMTTATQNFSHKIGQGGFGSVFFGRLEQGEDIAVKVLSVVSKQGVQEFLNEVELFSRVHHKNLVSLLGYCIESRELMLVYEHMSGGSLKDRLYGPIAEHSQLNWKTRLQIASDAAQGLEYLHIGCTPKIIHRDIKTANILLDRKFNGKLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYFSTHMLTEKSDVYSYAVVLLEIICGRRPINVKLPGDQLNLIRWVTPYVEMDENPAKMEEIIDKRLGRNYDINSIIGVAKLAIRCVHPEPSSRPSVDEVVAKLKEAIKLE
B9GQI1______________NWNAARIFSYKEIKAATNNFKEVIGRGSFGSVYLGKLSDGKLVAVKVRFDKSQLGADSFINEVYLLSQVRHQNLVCLEGFCHESKQQILVYEYLPGGSLADQLYGPNSQKVSLSWVRRLKIAADAAKGLDYLHNASDPRIIHRDVKCSNILLDKEMNAKVCDFGLSKQVMQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLRRSGTPDSFNLVLWAKPYLQ-----AGALEIVDENLKGTFDVESMRKAAIVAVRSVERDASQRPTIAEVLAELKEAYSIQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
903		50	50		1.0
1126	80		20		0.995493
1172	80		20		0.995493
1187		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain