SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2743

Length: 1591 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2743

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=U-box domain-containing protein 43; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	69%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	69%
Blast2go	binding	GO:0005488	Molecular Function	69%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SFX2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 443 - 811

Fln protein: FKFT*ECFTNDQRWGGPTHLGPSMHTTVNCIGFERKSC*YLCKPCYVYSIAPKNK*HNSCIVGI**DHIPAIIFNKFDTTFNTWKHCSSIPCHLLCTSGC*H*QI*EREEQFKYCFPFVKLHTLKCELML*NCCLSCLKMEIKEN*QNILEKNI*NV*QNLFQHLQMKKRKLPQLE*LEIFP*IAR*QNGF*KLGRCLRL*ISFLLEAFKPLVIL*KIS*LKILQEYYVGLQYPQTPIYNSKLLELMLFQFL*EFFNLVLL*QSAGQPFHSSNFHRIQEI*AHQSGKSKAFLCFSPSSVRRCRVHRGVCSVRTSFCLVEAEAIIPLVQALEEKEGGASEAALKALSTLVNDEYLENGVREIELADGIKPIVRLLTVGSTGEQEKAVWILERVFRNESYKLKYGNAAQMPLVDITQKGTNASKRLAAKILGHLNLLHEQSSYF*

Protein Length: 444

Fln nts: CTTTCAAGTTTACCTGAGAATGCTTTACAAATGATCAAAGATGGGGTGGTCCGACCCATCTTGGACCTTCTATGCACACCACTGTCAACTGTATTGGCTTTGAGAGAAAAAGCTGCTAATACCTATGCAAACCTTGCTATGTCTACAGCATTGCCCCAAAGAACAAATGACACAATAGCTGCATTGTTGGAATCTGATGAGATCATATACCAGCTATTATCTTTAATAAATTTGACACCACCTTCAATACATGGAAGCATTGTTCGAGCATTCCATGCCATTTGTTGTGTACCAGCGGCTGTTGACATTGACAAATTTAAGAGAGGGAGGAGCAATTCAAGTATTGCTTCCCTTTTGTGAAGCTACATACTCTGAAATGCGAGCTTATGCTGTGAAACTGTTGTTTATCTTGTCTCAAGATGGAGATAAAAGAAAATTAGCAGAACATCTTGGAGAAAAATATATGAAATGTTTAGCAAAACTTATTTCAACATCTTCAAATGAAGAAGAGAAAGCTGCCGCAGTTGGAATAATTGGAAATCTTCCCTTAAATAGCGAGATAACAGAATGGCTTCTAGAAGCTGGGACGTTGTCTACGATTGTGAATATCTTTTCTTCTGGAAGCCTTCAAACCACTGGTGATTTTGTGAAAAATCAGTTAGTTGAAAATACTGCAGGAGTATTATGTCGGTTTACAGTACCCACAGACCCCGATTTACAACTCAAAGCTGCTGGAGCTGATGTTATTCCAATTCTTGTAAGAGTTCTTCAATCTGGTACTCCTTTAGCAAAGTGCAGGGCAGCCATTTCACTCGAGCAATTTTCACAGAATTCAGGAAATTTGAGCACACCAGTCAGGAAAAAGCAAGGCTTTTTTATGTTTCTCACCTTCTTCTGTTAGGCGGTGTAGAGTTCACAGAGGTGTCTGTTCAGTTAGAACTTCTTTCTGTCTTGTTGAGGCCGAGGCTATTATCCCTCTAGTTCAAGCTCTTGAAGAGAAAGAAGGAGGTGCATCAGAAGCTGCACTGAAGGCTCTCTCAACTTTGGTAAATGATGAATACTTGGAAAATGGTGTTAGAGAAATTGAACTGGCAGATGGTATTAAGCCAATTGTCAGATTGCTTACTGTTGGATCCACAGGAGAGCAGGAAAAAGCTGTCTGGATTCTGGAAAGGGTGTTTCGGAATGAAAGTTACAAGTTAAAATATGGAAATGCAGCTCAGATGCCTCTTGTAGACATCACACAAAAGGGCACAAATGCATCAAAGCGCTTGGCAGCAAAAATCCTTGGTCACTTGAATCTTCTTCATGAGCAGTCTTCCTACTTCTAA___TTTCATCCATAATGTACGCATTGTAGAACTATAAAATCTTCTCCATGAGCAGTCTTTCTATTTTCTCTAGGATACAGATATCATATTCTGATATTGACTGATATGCCAAATGAATAATTCCCTAGGTATGGGGTTTTCTGGACCAGCTTTTGTCCTGACGAAAAATGATGAAATAATTTCAGGTGTACACTGGAGCATCTATTATTTCCTGTACATTAGAGAAGCACATATTACACTAGTGGAATTGAAGGGAAGTTCAT

Fln Alignment:

Contig2743___FLCFS--PSSVRRCRVHRGVCSVRTSFCLVEAEAIIPLVQALEEKEGGASEAALKALSTLVNDEY-LENGVREIELADGIKPIVRLLTVGSTGE-QEKAVWILERVFRNESYKLKYGNAAQM--PLVDITQKGTNASKRLAAKILGHLNLLHEQSSYF
Q9SFX2______________FSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRIEEIAREVGEEQNVTAALVDAFQNADFRTRQIAEKALRHIDKIPNFSGIF

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1223	16	83		0.994512
1225		83	16	0.994512
1226	83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain